New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1217350 =	181 (0.770)	14 (0.060)	4/192	27.1	0.12	intergenic (+73/+155)	gcvP/fabH1	glycine dehydrogenase/3‑oxoacyl‑ACP synthase III
	?	NC_014034	2747887 =	33 (0.130)					intergenic (‑219/+74)	RCAP_rcc02553/RCAP_rcc02554	hypothetical protein/NmrA family protein
Rejected: Position hash score below cutoff.

GTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCC.GCGGCCGAGAAGCGCCCGCC.GGCCGGCTGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGTTTC  >  NC_014034/2747800‑2747987                                                                                          |                                                                                                     gTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCCGCCCGAGGGCCTTTGCGc                                                                                           >  2:880316/1‑101 (MQ=18)                                    ggCGGCGCCCGCCCCGGCGGGCGAGATGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGcc                                                        <  1:3227835/101‑1 (MQ=17)                                              ggcccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATgg                                              >  2:1751191/1‑101 (MQ=18)                                              ggcccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATgg                                              >  2:2821873/1‑101 (MQ=18)                                                cccggcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCATAGGACCTCTGTGACGCATGGTCAAGGCGATGGcc                                            >  2:4209726/5‑101 (MQ=18)                                                    gcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGGGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTgg                                        >  2:4059751/1‑101 (MQ=21)                                                    gcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCTCAGGACCTCTGTGACGCCTGGCTAAGGCGATGGCCCTgg                                        >  2:328431/1‑101 (MQ=18)                                                     cgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGc                                       >  2:2560535/1‑101 (MQ=21)                                                     cgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGc                                       >  2:1207904/1‑101 (MQ=21)                                                      gggcGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGcc                                      >  2:412059/4‑101 (MQ=21)                                                       ggcGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCa                                     >  1:1871490/3‑101 (MQ=21)                                                         cGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAg                                   >  2:4009722/1‑101 (MQ=21)                                                          gagaAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAgg                                  >  2:4091709/1‑101 (MQ=21)                                                          gagaAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAgg                                  >  2:1214556/1‑101 (MQ=21)                                                             acgcgcCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGGCCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCa                               <  1:328484/99‑1 (MQ=18)                                                             aaGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATCGCCAAGGCGATGGACTTGGCCAAGGTCa                               >  2:2924502/1‑101 (MQ=21)                                                                      ccgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGcc                      >  1:3591268/4‑101 (MQ=255)                                                                      ccgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGcc                      >  2:363469/4‑101 (MQ=255)                                                                      ccgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGcc                      <  1:880418/98‑1 (MQ=255)                                                                       cgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCa                     >  2:77048/3‑101 (MQ=255)                                                                       cgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCa                     >  2:4397434/3‑101 (MQ=255)                                                                       cgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCa                     >  2:4089283/3‑101 (MQ=255)                                                                        gggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAg                    >  1:3730075/2‑101 (MQ=255)                                                                        gggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGCCACGGGACCTCTGTGACGCATGCCCAAGGCGATGGCCTGGGCCAGGGTCAGCTCATGCCAg                    >  1:2480665/2‑101 (MQ=21)                                                                         ggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAgc                   >  2:2131794/1‑101 (MQ=255)                                                                         ggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAgc                   >  1:1597133/1‑101 (MQ=255)                                                                           ccgggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAgcgc                 >  2:1302481/7‑101 (MQ=255)                                                                            cgggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgcc                >  1:850567/6‑101 (MQ=255)                                                                             gggcgctgcCCGAGGGCCTTTGGGCCCTCGCGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCCAGGTCAGCTCATGCCAGcgccg               >  2:850825/5‑101 (MQ=255)                                                                              ggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgccgc              >  1:445109/4‑101 (MQ=255)                                                                              ggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgccgc              >  2:168472/4‑101 (MQ=255)                                                                                 gctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGccgcccg           >  1:907744/1‑101 (MQ=255)                                                                                 gctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGccgcccg           >  2:4830271/1‑101 (MQ=255)                                                                                  ctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGccgcccgc          >  1:3887301/1‑101 (MQ=255)                                                                                    gcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCAc        >  2:4508120/1‑101 (MQ=255)                                                                                    gcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCAc        >  2:3181175/1‑101 (MQ=255)                                                                                    gcCCGAGGGCCTTTGGGCCCTCGGGGGGCACAGGCCCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCCCCGCCCGCAc        >  1:108057/1‑101 (MQ=255)                                                                                      ccGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACgg      >  1:60819/1‑101 (MQ=255)                                                                                       cGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGt     >  1:1818137/1‑101 (MQ=255)                                                                                       cGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGt     >  2:4656099/1‑101 (MQ=255)                                                                                        gAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGtt    >  2:3706994/1‑101 (MQ=255)                                                                                        gAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGtt    >  1:4129193/1‑101 (MQ=255)                                                                                        gAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGtt    <  1:4010024/101‑1 (MQ=255)                                                                                        gAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGACGCCCGCACGGtt    >  2:609172/1‑101 (MQ=255)                                                                                         aGGGCCTTTGGGCCCTCGGTGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGttt   >  1:3792812/1‑101 (MQ=255)                                                                                         aGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGCttt   >  2:1155639/1‑101 (MQ=255)                                                                                         aGGGCCTTTGGGCCCTCGGGGGGCACAGAACCTCTGTGACGGATGGACAAGGCGATGACCTTGGCCACGGCCAGCTCATGCGAGCTCCGGCCACCCGGttt   >  2:2618655/1‑101 (MQ=255)                                                                                          gggCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGTTTc  >  2:3672860/1‑101 (MQ=255)                                                                                          gggCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGTTTc  >  1:4456045/1‑101 (MQ=255)                                                                                          gggCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGTTTc  >  2:2326642/1‑101 (MQ=255)                                                                                          |                                                                                                     GTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCC.GCGGCCGAGAAGCGCCCGCC.GGCCGGCTGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGTTTC  >  NC_014034/2747800‑2747987 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG