New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1253890	34 (0.150)	50 (0.230)	4/178	26.1	0.39	intergenic (+48/+43)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
	?	NC_014034	2590190 =	121 (0.490)					intergenic (‑89/‑167)	glnE/RCAP_rcc02415	glutamate‑ammonia‑ligase adenylyltransferase/hypothetical protein
Rejected: Position hash score below cutoff.

CGCCGCGATGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG...................................................................................................  >  NC_014034/1253782‑1253890 ....................................................................................................GGGGGTGCGGGGGGCAGCGCCCCCGCCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTT  >  NC_014034/2590190‑2590288                                                                                                                                                                                                                           GGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGG                                                                                                    <  1:760538/101‑1 (MQ=1)          GGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTCCGG                                                                                                    <  2:4282173/101‑1 (MQ=1)           GTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCCCATCTTGCCCTAAATACCTCGGGGGTGCGGG                                                                                                   >  1:4507636/1‑101 (MQ=1)            gtCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGG                                                                                                  <  2:1753883/99‑1 (MQ=1)            TGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGG                                                                                                  <  2:895181/101‑1 (MQ=1)            TGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGG                                                                                                  <  2:4624016/101‑1 (MQ=1)            TGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGG                                                                                                  <  1:3612869/101‑1 (MQ=1)             GCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCGTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGG                                                                                                 <  2:1346682/101‑1 (MQ=1)             GCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGG                                                                                                 >  2:3594383/1‑101 (MQ=1)              tctGGCAGGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGc                                                                                                <  1:1757047/98‑2 (MQ=0)              CTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGTGTGCGGGGGc                                                                                                <  2:3749642/101‑2 (MQ=1)              CTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGc                                                                                                <  1:4197647/101‑2 (MQ=1)              CTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGc                                                                                                <  1:4097759/101‑2 (MQ=1)               TGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcg                                                                                               >  1:4863853/1‑99 (MQ=1)                GGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcgg                                                                                              >  1:408207/1‑98 (MQ=1)                GGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcgg                                                                                              <  2:506601/101‑4 (MQ=1)                GGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcgg                                                                                              <  2:4992563/101‑4 (MQ=1)                GGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcgg                                                                                              <  1:4628746/101‑4 (MQ=1)                GGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcgg                                                                                              <  2:2232215/101‑4 (MQ=1)                GGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcgg                                                                                              >  1:2386431/1‑98 (MQ=1)                 GGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGTGGGcgga                                                                                             <  1:2024283/101‑5 (MQ=1)                 GGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcgga                                                                                             <  1:1980523/101‑5 (MQ=1)                 GGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcgga                                                                                             <  2:4294677/101‑5 (MQ=1)                 GGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcaga                                                                                             >  2:1756917/1‑97 (MQ=1)                 GGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCCCGGGGGTGCGGGGGGgga                                                                                             >  1:2140024/1‑98 (MQ=0)                  GCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcggag                                                                                            <  2:4609684/101‑6 (MQ=1)                  GCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcggag                                                                                            <  2:3848099/101‑6 (MQ=1)                   CAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGCGCGGGGGcggagc                                                                                           >  1:4503486/1‑95 (MQ=1)                     AGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcggagccc                                                                                         >  2:3229788/1‑93 (MQ=1)                       CTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcggagccccc                                                                                       <  1:59153/101‑11 (MQ=1)                       CTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcggagccccc                                                                                       <  2:646284/101‑11 (MQ=1)                        TCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCG                                                                                     >  2:604280/1‑101 (MQ=1)                        TCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCG                                                                                     >  1:3543646/1‑101 (MQ=1)                        TCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCG                                                                                     >  2:3021901/1‑101 (MQ=1)                         CGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGC                                                                                    >  1:3450791/1‑101 (MQ=11)                         CGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGC                                                                                    >  1:3190604/1‑101 (MQ=11)                          GGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCC                                                                                   >  1:3898065/1‑101 (MQ=31)                          GGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCC                                                                                   >  2:3981516/1‑101 (MQ=31)                           GCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCG                                                                                  >  2:2108552/1‑101 (MQ=32)                            CTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGG                                                                                 >  1:3762198/1‑101 (MQ=32)                             TTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGG                                                                                >  1:2497099/1‑101 (MQ=32)                             TTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGG                                                                                >  1:718549/1‑101 (MQ=32)                              TCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGT                                                                               >  2:1093332/1‑101 (MQ=32)                               CCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTC                                                                              >  2:35233/1‑101 (MQ=32)                               CCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTC                                                                              >  2:2450411/1‑101 (MQ=32)                                CAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTCG                                                                             >  2:4029695/1‑101 (MQ=32)                                  GACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTCGCC                                                                           >  2:1747642/1‑101 (MQ=32)                                    CCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTCGCCTC                                                                         >  2:455902/1‑101 (MQ=32)                                    CCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTCGCCTC                                                                         >  2:1133117/1‑101 (MQ=32)                                     CGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTCGCCTCG                                                                        >  2:399269/1‑101 (MQ=32)                                      GGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTCGCCTCGG                                                                       >  2:4402737/1‑101 (MQ=32)                                       GCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTCGCCTCGGC                                                                      >  2:4467272/1‑101 (MQ=32)                                        CTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTCGCCTCGGCG                                                                     >  1:3701578/1‑101 (MQ=32)                                                                                                                                                                                                                  CGCCGCGATGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG...................................................................................................  >  NC_014034/1253782‑1253890 ....................................................................................................GGGGGTGCGGGGGGCAGCGCCCCCGCCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTT  >  NC_014034/2590190‑2590288 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG