New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395466	216 (1.300)	58 (0.350)	17/136	14.0	0.22	intergenic (+278/‑653)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1396165 =	184 (0.750)					coding (47/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

TCGGTGATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA................................................................................  >  NC_014034/1395421‑1395466 ..............................................................................GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGG  >  NC_014034/1396165‑1396212                                               ||||||||||||||||||||||||||||||||                                                 agcagcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCG                           >  2:3807962/11‑101 (MQ=0)  gcagcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGT                          <  2:2261171/92‑1 (MQ=0)   cagcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTG                         >  2:2234415/9‑101 (MQ=0)   cagcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTG                         <  2:189690/93‑1 (MQ=0)   cagcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTG                         >  1:2928173/9‑101 (MQ=0)    agcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGG                        <  1:82140/94‑1 (MQ=0)    agcggctGCGGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGG                        <  1:3526510/94‑1 (MQ=0)     gcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCACCCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                       <  2:1661797/95‑1 (MQ=0)     gcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                       <  1:477855/95‑1 (MQ=0)     gcggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGA                       <  2:1302225/95‑1 (MQ=0)      cggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                      <  1:54187/96‑1 (MQ=1)      cggctGCGGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGAT                      <  2:206686/96‑1 (MQ=0)       ggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATC                     >  2:3739807/5‑101 (MQ=1)       ggctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGGGGTTC                     >  1:2638458/5‑101 (MQ=0)        gctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                    <  1:3621198/98‑1 (MQ=1)        gctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                    <  2:1961055/98‑1 (MQ=1)        gctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                    >  1:1007183/4‑101 (MQ=1)        gcgGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                    <  2:3585850/98‑1 (MQ=1)         ctGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                   <  2:2718213/99‑1 (MQ=1)         ctGCGGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                   <  1:1754332/99‑1 (MQ=1)          tGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                  <  2:2101507/100‑1 (MQ=1)          tGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                  >  2:1840076/2‑101 (MQ=1)          tGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                  <  2:4062006/100‑1 (MQ=1)           ggGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                 <  1:642809/99‑1 (MQ=1)           GCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                 <  1:3846625/101‑1 (MQ=1)           GCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                 >  1:1266709/1‑101 (MQ=1)            CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                <  2:3173527/101‑1 (MQ=1)             GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC               <  1:3701546/101‑1 (MQ=1)             GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACC               >  1:4112736/1‑101 (MQ=1)              GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCC              <  2:3134417/101‑1 (MQ=1)               TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCc             <  1:4543318/101‑2 (MQ=1)               TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCc             <  1:2411224/101‑2 (MQ=1)               TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCc             <  1:4517310/101‑2 (MQ=1)               TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCc             >  1:2185868/1‑100 (MQ=1)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGC           <  1:3928218/101‑1 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCcccg          >  2:908102/1‑97 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCG          >  1:640531/1‑101 (MQ=1)                   TCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGg         <  2:4644622/101‑2 (MQ=1)                   TCCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGg         >  1:2280190/1‑100 (MQ=1)                    CCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgc        >  2:4398618/1‑99 (MQ=1)                    CCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgc        >  2:3670788/1‑99 (MQ=1)                    CCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgc        <  2:974032/101‑3 (MQ=1)                    CCCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgc        >  1:780972/1‑99 (MQ=1)                     CCCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcg       >  2:3079507/1‑98 (MQ=0)                      CCCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgt      >  1:2193081/1‑97 (MQ=0)                       CCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtc     <  1:432345/101‑6 (MQ=0)                       CCCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtc     <  2:3830578/101‑6 (MQ=0)                        CCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtcc    <  2:2666269/101‑7 (MQ=0)                        CCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtcc    <  2:2375870/101‑7 (MQ=0)                        CCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtcc    <  1:4175887/101‑7 (MQ=0)                        CCGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtcc    >  1:1111164/1‑95 (MQ=0)                         CGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtccc   <  1:4228479/101‑8 (MQ=0)                         CGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtccc   <  2:3933493/101‑8 (MQ=0)                         CGCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtccc   <  1:1554231/101‑8 (MQ=0)                          GCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtcccg  <  2:2627944/101‑9 (MQ=0)                          GCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtcccg  >  2:3137500/1‑93 (MQ=0)                          GCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtcccg  <  2:1093004/101‑9 (MQ=0)                          GCGGGGGCGTGGATCGAAACAAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGgcgtcccg  <  1:1121177/101‑9 (MQ=0)                                               ||||||||||||||||||||||||||||||||                                                 TCGGTGATCAGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA................................................................................  >  NC_014034/1395421‑1395466 ..............................................................................GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCGAAAAACGG  >  NC_014034/1396165‑1396212 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG