New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1435888	289 (1.300)	3 (0.010)	3/182	27.4	0.01	coding (710/1794 nt)	RCAP_rcc01335	Fis family GAF modulated sigma54 specific transcriptional regulator
	?	NC_014034	= 1937514	256 (1.050)					coding (783/1140 nt)	ispDF	bifunctional 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase
Rejected: Position hash score below cutoff.

CCGACTTCTGGCACGCGAGCGCGAATTCTTGATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGT....................................................................................................  >  NC_014034/1435781‑1435888 ...................................................................................................CGCCGATGTGGGCATGCATGCGCTGACCGACGCGATCTATGGCGCGCTGGCCGAGGGCGATATCGGCCGTCACTTCCCGCCCAGCGATCCGCAATGGAAAGGCGCCGCC  <  NC_014034/1937514‑1937415                                                                                                                                                                                                                                                                                          ctCGATGCTGATCATGGACCGCAGCGGCGCCGATGTGGGCATGCATGCGCTGACCGACGCGATCTATGGCGCGCTGGCCGAGGGCGATATCGGCCGTCACT                                     <  1:3457863/99‑1 (MQ=255)                                                                           CGATGCTGATCATGGACCGCAGCGGCGCCGATGTGGGCATGCATGCGCTGACCGACGCGATCTATGGCGCGCTGGCCGAGGGCGATATCGGCCGTCACTag                                   >  2:3457598/1‑99 (MQ=255)                                                                                                 CGGCGCCGATGTGGGCATGCATGCGCTGACCGGCGCGATCTATGGCGCGCTGGCCGAGGGCGATATCGGCCGTCACTTCCCGCCCAGCGATCCGCAATGGA             <  1:3985093/101‑1 (MQ=255)                                                                                                                                                                                                                  CCGACTTCTGGCACGCGAGCGCGAATTCTTGATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGT....................................................................................................  >  NC_014034/1435781‑1435888 ...................................................................................................CGCCGATGTGGGCATGCATGCGCTGACCGACGCGATCTATGGCGCGCTGGCCGAGGGCGATATCGGCCGTCACTTCCCGCCCAGCGATCCGCAATGGAAAGGCGCCGCC  <  NC_014034/1937514‑1937415 Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG