New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1435888289 (1.300)3 (0.010) 3/182 27.4 0.01 coding (710/1794 nt) RCAP_rcc01335 Fis family GAF modulated sigma54 specific transcriptional regulator
?NC_014034 = 1937514 256 (1.050)coding (783/1140 nt) ispDF bifunctional 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase
Rejected: Position hash score below cutoff.

Only 100 of 319 total aligned reads displayed.

CTGGCACGCGAGCGCGAATTCTTGATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGATCAGGCCCCGGACACC  >  NC_014034/1435788‑1435988
                                                                                                    |                                                                                                    
cTGGCCCGCGAGCGCGAATTCTTGATGGAACAGTTGCCCCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGt                                                                                                      <  1:3296468/101‑1 (MQ=255)
 tGGCACGCGAGCGCGAATTCTTGATGGCACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTc                                                                                                     >  1:1564337/1‑101 (MQ=255)
    cccgggAGCGCGAATTCTTGAGGGAACAGTTCCCCCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCGGATCATGGACCGCAGCGGCGCCGATGTCTTc                                                                                                  <  1:4508498/96‑1 (MQ=255)
    cccgcgAGCGCGAATTCTTGATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTc                                                                                                  <  1:1445314/99‑1 (MQ=255)
    cACGCGAGCGCGAATTCTTGATGAAACAGTTGCCCCGGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTc                                                                                                  <  1:2250379/101‑1 (MQ=255)
     aCGCGAGCGCGAATTCTTGATGGAACAGTTGCCCCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCg                                                                                                 <  1:2983613/101‑1 (MQ=255)
        cgAGCGCGAATTCTTGATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGAGGCTGATCATGGACCGCAGCGGCGCCGATGGCTTCGCaa                                                                                              >  2:2897332/1‑101 (MQ=255)
         gaccgccAATTCTTGATGGAACGGTTCCCCCTCCGCCGCCTGCCCCGTGAAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAAc                                                                                             <  2:419233/98‑1 (MQ=255)
         gaccgcaAATTCTTAAGGGAACAGTGCCCCCTGCCCCCCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAAc                                                                                             <  2:3043882/98‑1 (MQ=255)
         gAGCGCGAATTCTTGATGGAACAGTTGCCCCGGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAAc                                                                                             <  1:2901107/101‑1 (MQ=255)
         gAGCGCGAATTCTTGATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAAc                                                                                             >  2:1289788/1‑101 (MQ=255)
          ggcgcAAATTTTTGATGGAACAGTTGCCCCTGCCCCGCCTGCGCCGTGGAAGCGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACa                                                                                            <  2:4941104/100‑1 (MQ=255)
              cgATTTTTTGATGGAACAGTTGCCCCTGCGCCGCCTGTGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAgaga                                                                                        <  1:4323609/101‑1 (MQ=255)
              cgATTTTTTGAGGGAACAGTTGCCCCGGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAgaga                                                                                        <  1:1094180/101‑1 (MQ=255)
              cgAATTCTTGATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAgaga                                                                                        >  1:3150965/1‑101 (MQ=255)
              cgAATTCTTGAGGGAACAGTTGCCCCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAgaga                                                                                        <  2:2830706/101‑1 (MQ=255)
              cgAATTCTTGAGGGAACAGTTGCCCCGGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAgaga                                                                                        <  2:239805/101‑1 (MQ=255)
                aaTTCTTGATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAAc                                                                                      >  2:392323/1‑101 (MQ=255)
                aaTTCTTGATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAAc                                                                                      >  1:876068/1‑101 (MQ=255)
                 ttttttGATGAAACAGTTGCCCCTGCCCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACt                                                                                     <  1:3548668/97‑1 (MQ=255)
                  ttCTTGATGGACCGGTGGCCCCTGCCCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACtt                                                                                    <  2:2295492/101‑1 (MQ=255)
                  ttCTTGATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACtt                                                                                    >  1:325013/1‑101 (MQ=255)
                   tCTTGATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACttc                                                                                   >  1:4581393/1‑101 (MQ=255)
                     ttgggggAACAGTTGCCCCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACttcgt                                                                                 <  1:5014126/96‑1 (MQ=255)
                      tGATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACttcgtt                                                                                >  2:1138503/1‑101 (MQ=255)
                       gagggAACAGTTGCCCCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACttcgttc                                                                               <  1:3722453/98‑1 (MQ=255)
                       gATGGAACGGTTGCCCCTGCGCCGCCTGCGCCGTGGAACCGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACttcgttc                                                                               <  2:1686103/101‑1 (MQ=255)
                       gATGGAACAGTTGCCCCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACttcgttc                                                                               <  2:3969188/101‑1 (MQ=255)
                       gATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACttcgttc                                                                               >  1:4430937/1‑101 (MQ=255)
                       gATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACttcgttc                                                                               >  2:234750/1‑101 (MQ=255)
                        gagaaaCATTTGCCCCTGCGCCGCATGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACttcgttcg                                                                              <  2:2000119/97‑1 (MQ=255)
                        atgcaacttttGCCCCGGCCCCCCCTGCTCGGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACttcgttcg                                                                              <  1:533041/92‑1 (MQ=255)
                        aTGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACttcgttcg                                                                              >  1:2138113/1‑101 (MQ=255)
                          ggAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGt                                                                            >  1:2481737/1‑101 (MQ=255)
                            aaaggTTGCCCCTGCGCCGCCTGCGCCGGGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTc                                                                          <  2:4650702/97‑1 (MQ=255)
                            aaCAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTc                                                                          >  2:1565630/1‑101 (MQ=255)
                            aaCAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTc                                                                          >  1:484316/1‑101 (MQ=255)
                             aCAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCt                                                                         >  2:4250885/1‑101 (MQ=255)
                             aCAGTGGCCCCTGCGCCGCCTGCGCCGGGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCt                                                                         <  2:805135/101‑1 (MQ=255)
                              cattggcccctgcgccgcctgcgccgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTg                                                                        <  1:4636629/93‑1 (MQ=255)
                                gTTGCCCCGGCGCCGCCTGCGCCGGGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGcg                                                                      <  1:4205267/101‑1 (MQ=255)
                                gTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGcg                                                                      >  1:4858359/1‑101 (MQ=255)
                                gTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGcg                                                                      >  1:378244/1‑101 (MQ=255)
                                     aCCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGcgacgac                                                                 >  1:1021192/1‑101 (MQ=255)
                                      ccggcgccgccggcgccgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGcgacgacg                                                                <  2:1760477/98‑1 (MQ=255)
                                       ctgcgccgcctgcgccgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCACAAGAAAACTTGGTCCGTTCTTGcgacgagga                                                               >  2:4206710/1‑101 (MQ=255)
                                       ctgcgccgcctgcgccgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGcgacgacga                                                               >  2:3776781/1‑101 (MQ=255)
                                         gccccgcctgcgccgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACa                                                             <  1:629231/98‑1 (MQ=255)
                                           gccgcctgcgccgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACCGAGAACTTCGTTCGGTTCTACGACGACGACAAg                                                           >  1:4345175/1‑101 (MQ=255)
                                           cccgccggcgccgTGAAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAg                                                           <  2:3124942/100‑1 (MQ=255)
                                            ccgcctgcgccgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAgg                                                          >  1:2619805/1‑101 (MQ=255)
                                            ccgccggcgccgGGGAAAGGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAgg                                                          <  1:4787382/101‑1 (MQ=255)
                                              gcctgcgccgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCg                                                        >  2:1742826/1‑101 (MQ=255)
                                              ccctgcgcggTGGAAGCGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCg                                                        <  2:4994020/100‑1 (MQ=255)
                                                ctgcgccgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGtt                                                      >  2:3812812/1‑101 (MQ=255)
                                                ctgcgccgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGtt                                                      >  1:3208580/1‑101 (MQ=255)
                                                cggcccctgggAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGtt                                                      <  1:3965251/92‑1 (MQ=255)
                                                 tgcgccgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTg                                                     >  1:1726769/1‑101 (MQ=255)
                                                 tgcgccgGGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTg                                                     <  1:2331589/101‑1 (MQ=255)
                                                   cgccgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTgcg                                                   <  1:4101571/101‑1 (MQ=255)
                                                   cgccgGGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTgcg                                                   <  1:2855698/101‑1 (MQ=255)
                                                    gccgTGGAAAGGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTgcgg                                                  <  2:4858032/101‑1 (MQ=255)
                                                     ccgggaaaaCGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTgcggc                                                 <  2:4397804/95‑1 (MQ=255)
                                                      cgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTgcggcg                                                >  1:3665517/1‑101 (MQ=255)
                                                      cgTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTgcggcg                                                >  2:1186238/1‑101 (MQ=255)
                                                       gTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGcggcgg                                               >  1:4125102/1‑101 (MQ=255)
                                                         ggAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCt                                             <  1:363565/101‑1 (MQ=255)
                                                         ggAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCt                                             >  2:2531807/1‑101 (MQ=255)
                                                          gAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTc                                            >  2:634143/1‑101 (MQ=255)
                                                          gAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGAAGACAAGGCGTTGCGGCGGCTc                                            <  1:679140/101‑1 (MQ=255)
                                                            accGAGGCGATGCTGATCATGGGCCGCAGGGGCGCCGATGTCTTCGCAACAGACAACTTCGTTCTGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCag                                          <  1:2027937/99‑1 (MQ=255)
                                                            aaggAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCag                                          <  1:1308607/98‑1 (MQ=255)
                                                             aggAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCaga                                         <  1:1851488/99‑1 (MQ=255)
                                                               gAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCagaga                                       >  1:1172174/1‑101 (MQ=255)
                                                                aGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCagagag                                      <  2:3177733/101‑1 (MQ=255)
                                                                 gCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAgc                                     <  2:1635331/101‑1 (MQ=255)
                                                                   cGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAgcgc                                   >  2:4085352/1‑101 (MQ=255)
                                                                    gATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCa                                  >  2:4519322/1‑101 (MQ=255)
                                                                      tGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCAtt                                >  2:1890496/1‑101 (MQ=255)
                                                                       gCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTc                               <  2:2133444/101‑1 (MQ=255)
                                                                         tGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCg                             <  1:1756783/101‑1 (MQ=255)
                                                                          gATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGa                            <  1:4294643/101‑1 (MQ=255)
                                                                           aTCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGaa                           >  1:93412/1‑101 (MQ=255)
                                                                             cATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAAcc                         >  2:611769/1‑101 (MQ=255)
                                                                             cATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAAcc                         >  1:2771002/1‑101 (MQ=255)
                                                                                ggACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCa                      <  2:875966/101‑1 (MQ=255)
                                                                                  aCCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATc                    <  2:2220176/101‑1 (MQ=255)
                                                                                    cGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGa                  >  1:2565786/1‑101 (MQ=255)
                                                                                    cGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGa                  >  2:3503586/1‑101 (MQ=255)
                                                                                       aGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGATCa               <  2:3665245/101‑1 (MQ=255)
                                                                                       aGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGATCa               <  1:4394573/101‑1 (MQ=255)
                                                                                       aGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGATCa               <  2:1448178/101‑1 (MQ=255)
                                                                                       aGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGATCa               <  1:3813097/101‑1 (MQ=255)
                                                                                        gcggcgCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGATCAg              <  1:2937382/101‑1 (MQ=255)
                                                                                           gcgcCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGATCAGGcc           >  1:4062607/1‑101 (MQ=255)
                                                                                               cGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGATCAGGCCCCgg       <  2:2703730/101‑1 (MQ=255)
                                                                                               cGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGATCAGGCCCCgg       <  2:4311294/101‑1 (MQ=255)
                                                                                                gATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGATCAGGCCCCGGa      >  2:2599264/1‑101 (MQ=255)
                                                                                                 aTGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGATCAGGCCCCGGac     <  2:5037920/101‑1 (MQ=255)
                                                                                                    tCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGATCAGGCCCCGGACAcc  >  1:3595257/1‑101 (MQ=255)
                                                                                                    |                                                                                                    
CTGGCACGCGAGCGCGAATTCTTGATGGAACAGTTGCACCTGCGCCGCCTGCGCCGTGGAAACGAGCCGATGCTGATCATGGACCGCAGCGGCGCCGATGTCTTCGCAACAGAGAACTTCGTTCGGTTCTGCGACGACGACAAGGCGTTGCGGCGGCTCAGAGAGCGCATTCCGAACCTCATCGATCAGGCCCCGGACACC  >  NC_014034/1435788‑1435988

Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG