New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1699965 =	53 (0.260)	20 (0.100)	9/164	21.1	0.27	intergenic (+38/+5)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
	?	NC_014034	= 2474945	53 (0.220)					intergenic (‑108/+18)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

CGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGG...................................  <  NC_014034/1700045‑1699965 ....................................................................................................CCGAGGCGACCCGCGG  <  NC_014034/2474945‑2474930                                                                                   ||||||||||||||||||                 CGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGC                 <  2:4983471/101‑1 (MQ=0) CGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGC                 <  2:4313377/101‑1 (MQ=0)   ACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCG               >  1:4787737/1‑101 (MQ=0)     GCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAG             <  2:3590649/101‑1 (MQ=0)     GCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGATGAGGGGGTATTTCGCCTCGGCTGACGCCGAG             <  1:3109504/101‑1 (MQ=0)      CCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGG            >  1:2139008/1‑101 (MQ=0)      CCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGG            <  1:2461476/101‑1 (MQ=0)       CTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGC           <  2:1564238/101‑1 (MQ=0)       CTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGC           <  2:1228129/101‑1 (MQ=0)        TGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCG          <  2:681178/101‑1 (MQ=0)         GTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGA         <  2:2734351/101‑1 (MQ=0)         GTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGA         >  2:3480562/1‑101 (MQ=0)         GTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGA         <  1:2897567/101‑1 (MQ=0)            tcgCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCC      <  2:4291865/98‑1 (MQ=0)            TCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCC      <  1:4040806/101‑1 (MQ=0)            TCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCC      <  1:2683051/101‑1 (MQ=0)            TCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCC      <  1:198195/101‑1 (MQ=0)              TCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGg    >  1:1441376/1‑100 (MQ=2)               CGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGgg   >  2:3552265/1‑99 (MQ=2)                GGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGGG  >  2:1131170/1‑101 (MQ=2)                                                                                   ||||||||||||||||||                 CGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGGG...................................  <  NC_014034/1700045‑1699965 ....................................................................................................CCGAGGCGACCCGCGG  <  NC_014034/2474945‑2474930 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG