New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1699965 =	53 (0.260)	20 (0.100)	9/164	21.1	0.27	intergenic (+38/+5)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
	?	NC_014034	= 2474945	53 (0.220)					intergenic (‑108/+18)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

AAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGCGGGGGGGCGCAGCCCCCCGCGGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAGCCGCGAGG  >  NC_014034/2474847‑2475045                                                                                                    |                                                                                                       aaaCCGCGGCCCACCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCG.CCCCGGGcg                                                                                                     >  2:4794645/1‑100 (MQ=25)     cgcgGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGCCG.CCCCGGGGTTggc                                                                                                 >  2:2053887/1‑99 (MQ=25)             cccccACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCG.CCTCCGGGCTGccccgggggg                                                                                         >  2:2225940/1‑94 (MQ=21)                ccACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCG.CCCCCGGCGTGccccgagggggcc                                                                                      >  2:4480458/1‑91 (MQ=21)                       aaCGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCGCCCCCGGGCTTG.CCGGGGGGGCATCAG.cccc                                                                              >  1:2001505/1‑100 (MQ=18)                         cGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCG.CCCCCGGCTTGCCCGAGGCGACATCAG.CCCTTc                                                                            >  1:831406/1‑101 (MQ=25)                                 cTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGTCG.CCCCGGGCTTGCCCCAGGCGGCACCAG.CCCTTctgctttcg                                                                    >  2:616633/1‑93 (MQ=18)                                  ttttCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGTCC.GCCCGGGGCTGCCCGCCGCGGCACCCG.CCCTTCgtcgtcccg                                                                   >  2:4803743/1‑93 (MQ=12)                                    ttCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGTCG.CCCCGGGCTTGCCCGCGGCGGCACACG.CCCTTCGGTTTCGCggg                                                                 >  2:3781910/1‑101 (MQ=18)                                    ttCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCG.CCCCCGGCCTGGCCGCGGGGACCTCCGCCCCTCCGGTTTCGGgg                                                                  >  2:2680818/1‑101 (MQ=12)                                      ccTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCCTCGGTTTCCCGGGCa                                                               >  1:869688/1‑101 (MQ=21)                                       cTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGTCG.CCCCGGGCCTTCCCCCGGCGACAACAGCCCCTCCGGTTTTGGGGGcg                                                               >  2:226723/1‑100 (MQ=12)                                         tGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGTCG.CCCCGGGTCTTCCCGAGGCGACATCAG.CCCCTCGGGTTCCAGGGCA.GGc                                                           >  2:5005974/1‑101 (MQ=18)                                             cAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCG.CCCCGGGGTTGCCCGCGGGGGCATCAG.CCCTTCGGGTTCGAGGGGA.GGcccct                                                       >  2:2698848/1‑99 (MQ=21)                                                  aCGCAGGGCGGGTGGTGC.GGGGGGCGCAGCCCCCCGCGGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCt                                                  <  2:1147926/101‑1 (MQ=255)                                                           ggggggTGC.GGGGGGCGCAGCCCCCCGCGGGGCG.CCCCGGGGTTTCCCGGGGGGGCCCCCG.CCCCTCGGGTTCGGGGGGAGGGCCCTGGTCCTT.CGTgcgg                                         >  1:1222979/1‑101 (MQ=2)                                                           ggggggTGC.GGGGGGCGCAGCCCCCCGCGGGGCG.CCCCGGGCTTGCCCCAGGCGACATCAG.CCCCTCGGGTTCGAGGGCA.GGCCCCTTTCCTTGCGGgcgg                                         >  2:2348999/1‑101 (MQ=18)                                                            gggggTGC.GGGGGGCGCAGCCCCCCGCGGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTTGAGGGCA.GGCCCCTGTCCTTGCGTgcggc                                        >  2:805226/1‑101 (MQ=255)                                                            gggggTGC.GGGGGGCGCAGCCCCCCGCGGGTCG.CCTCGGGCCTGCCCGAGGCGACATCAG.CCCCTCCGGTTCGAGGGCC.GGCCCCTGTCCTTGCGTgcggc                                        >  2:1516458/1‑101 (MQ=18)                                                             ggggTGC.GGGGGGCGCAGCCCCCCGCGGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGGCCTTGTCCTTGCGTgcggcg                                       >  2:3994164/1‑101 (MQ=255)                                                                     ggggggCGCAGCCCCCCGCGGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTttct                                >  2:882092/1‑101 (MQ=255)                                                                     ggggggCGCAGCCCCCCGCGGGTCG.CCTCGGGCTTGCCCCAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCCTTTCCTTGCGTGCGGCGGGTttct                                >  2:1387729/1‑101 (MQ=37)                                                                      gggggCGCAGCCCCCCGCGGGTCG.CCTCGGGCCTGCCCGAGGCGGCATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCCTCTCCTTGCGGGCGGCGTGGttctt                               >  2:1840895/1‑101 (MQ=25)                                                                            gtcctgctcggcgGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTc                         <  1:148266/91‑1 (MQ=255)                                                                              aGCCCCCCGCGGGTCG.CCTCGGGCTTGCCCGAGGCGGCATCAG.CCCTTTGGTTTTGGGGGGA.GGCCCTTGGCCTTGCGTGCGGGGTGTTTCTTCGCCCCgc                       >  2:330620/1‑100 (MQ=25)                                                                               ttctgcagcgGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGAc                      <  1:5006304/94‑1 (MQ=255)                                                                                ccgccggcgGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACg                     <  2:2667856/95‑1 (MQ=255)                                                                                  ccgggcgGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTg                   <  2:869586/97‑1 (MQ=255)                                                                                    gggcgGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCt                 <  1:80572/99‑1 (MQ=255)                                                                                    ccGCGGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGGGGTTTTTCGCCTCGACGGGCt                 >  2:2189089/1‑101 (MQ=38)                                                                                      gggggTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTc               <  2:1002069/99‑1 (MQ=255)                                                                                      gcgGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTTGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTc               >  2:215513/1‑101 (MQ=255)                                                                                      gcgGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTc               >  1:631713/1‑101 (MQ=255)                                                                                      gcgGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTc               <  1:2349163/101‑1 (MQ=255)                                                                                      gcgGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTc               <  2:2924891/101‑1 (MQ=255)                                                                                      gcgGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGGGCGGCGTGTTTCTTCGCCTCGACGTGCTTc               >  2:2516051/1‑101 (MQ=255)                                                                                       cgGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCg              <  1:1878565/101‑1 (MQ=255)                                                                                       cgGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCg              >  2:2848582/1‑101 (MQ=255)                                                                                       cgGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCg              >  2:2305003/1‑101 (MQ=255)                                                                                        gtgTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGt             <  2:3551423/99‑1 (MQ=255)                                                                                        gggTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGt             >  1:4859520/1‑101 (MQ=255)                                                                                         ggTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTc            >  2:975948/1‑101 (MQ=255)                                                                                         ggTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTc            <  1:17087/101‑1 (MQ=255)                                                                                          gTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCa           >  1:4630168/1‑101 (MQ=255)                                                                                          gTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCa           >  1:271022/1‑101 (MQ=255)                                                                                          gTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCa           >  2:1403593/1‑101 (MQ=255)                                                                                            cG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAGc         >  1:4295324/1‑101 (MQ=255)                                                                                            cG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAGc         >  1:3180459/1‑101 (MQ=255)                                                                                             g.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAGcc        <  1:805328/101‑1 (MQ=255)                                                                                               ccTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAGCcg       >  2:3597113/1‑101 (MQ=255)                                                                                               ccTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAGCcg       >  1:4656532/1‑101 (MQ=255)                                                                                                 tCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAGCcgcg     <  1:2226095/101‑1 (MQ=255)                                                                                                  cGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAGCCGCGa    <  1:2699033/101‑1 (MQ=255)                                                                                                  cGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAGCCGCGa    >  1:3689510/1‑101 (MQ=255)                                                                                                   gggCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAGCCGCGAg   >  1:4150097/1‑101 (MQ=255)                                                                                                    ggCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAGCCGCGAgg  >  1:2380438/1‑101 (MQ=255)                                                                                                    ggCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAGCCGCGAgg  >  2:4656283/1‑101 (MQ=255)                                                                                                    |                                                                                                       AAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGCGGGGGGGCGCAGCCCCCCGCGGGTCG.CCTCGGGCTTGCCCGAGGCGACATCAG.CCCTTCGGTTTCGAGGGCA.GGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAGCCGCGAGG  >  NC_014034/2474847‑2475045 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG