New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2185978	13 (0.060)	18 (0.080)	12/192	21.4	0.34	intergenic (+251/‑254)	mtlK/RCAP_rcc02028	mannitol 2‑dehydrogenase/FeoA family protein
	?	NC_014034	2330300 =	56 (0.230)					intergenic (+275/+37)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

AAGCAGCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAACCG.CCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCC..................................................................................................  >  NC_014034/2185875‑2185978 .....................................................................................................GCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGT  >  NC_014034/2330300‑2330397                                                                                                                                                                                                                 AGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCC                                                                                                   <  1:2196920/101‑1 (MQ=0)     AGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCC                                                                                                   <  1:860733/101‑1 (MQ=0)      GCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC                                                                                                  <  1:2344889/101‑1 (MQ=0)      GCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC                                                                                                  <  2:2714406/101‑1 (MQ=0)           TTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGG                                                                                             >  1:1118530/1‑101 (MQ=0)                                                                    ctggggcCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGG                                     <  2:2198929/94‑1 (MQ=25)                                                                        ggcCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCC                                 <  2:4305162/98‑1 (MQ=17)                                                                         gcCAAAGACCCCGGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCG                                <  1:1618085/99‑1 (MQ=2)                                                                                     GGGGGCCGGGGGGCGGACCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTC                    <  2:4920317/101‑1 (MQ=0)                                                                                       gggccgGGGGGCGGAGCCCACGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTT                  <  2:3774579/95‑1 (MQ=0)                                                                                       GGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTT                  <  2:1365710/101‑1 (MQ=1)                                                                                            CGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGA             <  1:4970217/101‑1 (MQ=1)                                                                                             GGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGAT            <  2:2964880/101‑1 (MQ=1)                                                                                                 GCGGACCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACC        <  2:2833715/101‑1 (MQ=1)                                                                                                  CGGAGCCCCCGGCGGGGCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGGCGCCTTCTTCGGGGTCACCC       >  2:2994880/1‑101 (MQ=0)                                                                                                   GGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCG      <  1:4553362/101‑1 (MQ=1)                                                                                                   GGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCCTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCG      >  2:2604041/1‑101 (MQ=1)                                                                                                    GAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAAAACGCCCGCGGGCAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCcc     >  2:3319072/1‑99 (MQ=0)                                                                                                                                                                                                             AAGCAGCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAACCG.CCCCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCC..................................................................................................  >  NC_014034/2185875‑2185978 .....................................................................................................GCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGT  >  NC_014034/2330300‑2330397 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG