New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2185978	13 (0.060)	18 (0.080)	12/192	21.4	0.34	intergenic (+251/‑254)	mtlK/RCAP_rcc02028	mannitol 2‑dehydrogenase/FeoA family protein
	?	NC_014034	2330300 =	56 (0.230)					intergenic (+275/+37)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

CAGCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAACCG.CCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..CCC...GC.CGGGTCTCCTCCGGGAGCAAGGCCGAGGCGAGACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAGCCCGGCCAGGCA  >  NC_014034/2185878‑2186071                                                                                                           |                                                                                                  cagcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..ccc                                                                                                   >  1:1976428/1‑101 (MQ=255) cagcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCG.CCCGCTTTCACCTTGGCTCAAAGATCCCGGGGGTCCGGGGGCGGA..G..ccc                                                                                                   >  1:4243165/1‑101 (MQ=37)  agcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccc                                                                                                  <  1:2196920/101‑2 (MQ=37)  agcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccc                                                                                                  <  1:860733/101‑2 (MQ=37)  agcGGCTTGCCCCGAAGGACTTG.TTTTAATGGCACAGGAAACGCCGAACCGCCCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGAGGA..G..cccc                                                                                                  <  2:4150550/101‑2 (MQ=25)   gcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCC.CTTTCACCTTGGCTCGAATATCCCGGGGGTCCGGGGGCGGA..G..ccccc                                                                                                 <  1:4534055/101‑3 (MQ=37)   gcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..ccccc                                                                                                 <  1:2344889/101‑3 (MQ=37)   gcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..ccccc                                                                                                 <  2:2714406/101‑3 (MQ=37)   gcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCC.CTTTCACCTTGGCTCAAATATCCCGGGGGGCCGGGGGCGGA..G..ccccc                                                                                                 >  2:375640/1‑99 (MQ=37)        ttGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccggcgg                                                                                            >  1:1118530/1‑94 (MQ=25)          gCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccggcgggg                                                                                          >  2:3480721/1‑92 (MQ=21)          gCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccggcgggg                                                                                          >  2:2166333/1‑92 (MQ=21)           ccccGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccggcgggcg                                                                                         >  2:576145/1‑91 (MQ=21)                                           aCGCCGACCCGCCCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC...GG.CGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACAcccc                                                      <  2:4712730/101‑1 (MQ=2)                                                gAACCGCCCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC...GG.CGGGGCGCCGCCGGG.G.AAGGCCGAGGCGGAAAAcccccccgc                                                 >  1:638168/1‑96 (MQ=2)                                                   ccccccc.cTTCCACCTTGGCCAAAAGACCCCGGGGGCCGGGGGCCGTA..GC.CCC...TCGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCac                                              <  2:4195431/97‑1 (MQ=2)                                                            tttCACCTGGGCTCAAATACCCCGGGGGGCCGGGGGCGGA..GCCCCC...GG.CGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACcgaccgac                                      <  1:1354669/101‑1 (MQ=9)                                                                cccTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC...GG.CGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGc                                  <  2:2483931/100‑1 (MQ=9)                                                                cccTTGGCTCAAATACCCGGGGGGCCGGGGGGCGGACCC..CCC...GG.CGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGc                                  <  2:4581361/100‑1 (MQ=9)                                                                 ccTTGGCTCAAATACCCCGGGGGTCCGGGGGGGGACCC..CCC...GG.CGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCg                                 <  2:2305330/101‑1 (MQ=9)                                                                   ttGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC...GG.CGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGAc                               <  1:2471680/101‑1 (MQ=14)                                                                              atCCCGGGGGTCCGGGGGCGGA..GCCCCC...GG.CGGGGCGCCCCCGG..CCAAGCCCCAGGCGAAAAACCCCAGCGCCCCCCCCCCACCTGCGACGGCCCGGcgcg                    >  2:4058630/1‑101 (MQ=2)                                                                                cccGGGGGGCCGGGGGCGGA..G..CCCCCGGG.CGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCgcgc                   <  1:737388/101‑1 (MQ=12)                                                                                   gggggTCCGGGGGCGGA..GCCCCC...GG.CGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCaaaa               <  1:1619847/101‑1 (MQ=18)                                                                                                ggcggacccccc...GG.CGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAGCCCGGCcagg    <  2:631719/92‑1 (MQ=21)                                                                                                  cggagccccc...GG.CGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAGCCCGGCcaggca  <  1:2714778/94‑1 (MQ=21)                                                                                                           |                                                                                                  CAGCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAACCG.CCC.CTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..CCC...GC.CGGGTCTCCTCCGGGAGCAAGGCCGAGGCGAGACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCAAAAGCCCGGCCAGGCA  >  NC_014034/2185878‑2186071 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG