New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221953 =272 (1.130)39 (0.160) 16/196 19.6 0.07 coding (704/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222060 847 (3.460)coding (597/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC....................................................................................................  <  NC_014034/222054‑221953
....................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACC  <  NC_014034/222060‑221961
                                                                                                                                                                                                          
      TCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACC                                                                                                 <  1:2790264/101‑1 (MQ=0)
       CCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCC                                                                                                <  2:4164793/101‑1 (MQ=0)
       CCCACGGACCGGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCGACGGACCC                                                                                                >  1:4365902/1‑101 (MQ=0)
        cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                                               <  1:1491952/99‑1 (MQ=0)
         gACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA                                                                                              >  1:4918931/2‑101 (MQ=0)
         ccCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA                                                                                              <  1:4590839/99‑1 (MQ=0)
          ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGGCCCGAC                                                                                             >  1:3676861/1‑101 (MQ=0)
            GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                                                           >  1:4435786/1‑101 (MQ=0)
            GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGCCCG                                                                                           >  2:4102895/1‑101 (MQ=0)
            GGACCCGACCCATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                                                           <  2:576216/101‑1 (MQ=0)
             gacCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                                                                                          >  1:3362093/4‑101 (MQ=0)
              acCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGAc                                                                                         >  1:1534433/3‑100 (MQ=0)
               cCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATC                                                                                        <  2:907900/100‑1 (MQ=0)
                CCGACCGATCCCACGGACCCGACCTATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCC                                                                                       >  1:1665519/1‑101 (MQ=0)
                 CGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCC                                                                                      <  2:4006000/101‑1 (MQ=12)
                  gtggGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCA                                                                                     >  2:4000632/5‑101 (MQ=0)
                  GACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGCCCGATCCCA                                                                                     >  1:1399991/1‑101 (MQ=0)
                  GACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACCGACCCGACCGATCCgc                                                                                     >  2:3175577/1‑99 (MQ=0)
                  GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCGACGGACCCGACCGACCCCA                                                                                     >  1:289005/1‑101 (MQ=0)
                   ACCGATCCCACGGACCCGACGGATCCCACGGACCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC                                                                                    <  1:674405/101‑1 (MQ=0)
                    CCGATCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACG                                                                                   <  1:2017682/101‑1 (MQ=2)
                     CGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGc                                                                                  >  2:4821217/1‑100 (MQ=0)
                     CGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACACGACCGATCCGACGGACCCGACCGATCCCACGG                                                                                  >  2:441502/1‑101 (MQ=0)
                      GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATGCGACGGACCCGACCGATCCCACCGA                                                                                 >  2:1146121/1‑101 (MQ=0)
                       ATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCCCGGAc                                                                                >  1:1784591/1‑100 (MQ=0)
                       ATCCCACGAACCCGACCGATCCCACGGATCCAACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGAc                                                                                <  1:4182538/101‑2 (MQ=0)
                          CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                                                             <  1:1645632/101‑1 (MQ=0)
                          CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                                                             <  2:1364407/101‑1 (MQ=0)
                          CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                                                             <  1:4846360/101‑1 (MQ=0)
                          CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                                                             <  1:92785/101‑1 (MQ=0)
                           CACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGA                                                                            >  1:694419/1‑101 (MQ=0)
                           CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACGGATCCCACGGACCCGA                                                                            >  2:2345867/1‑101 (MQ=0)
                            ACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGAC                                                                           >  2:4073156/1‑101 (MQ=0)
                             ctGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACC                                                                          <  1:341954/99‑1 (MQ=1)
                              GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGAACCGACgg                                                                         >  2:3261507/1‑99 (MQ=9)
                              GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCCCGGACCCGACCG                                                                         >  2:4877601/1‑101 (MQ=0)
                                             CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACAGATCCCACGGACCCGACCGATCCCACGGACCCca                                                          >  1:4467127/1‑99 (MQ=0)
                                               CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACC                                                        >  1:4408746/1‑101 (MQ=0)
                                                GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCGACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACgg                                                       >  2:691844/1‑99 (MQ=12)
                                                                                                                                                                                                          
GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC....................................................................................................  <  NC_014034/222054‑221953
....................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACC  <  NC_014034/222060‑221961

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 41 ≤  ATCG