New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221953 =245 (1.150)62 (0.290) 23/174 14.8 0.21 coding (704/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222128 215 (0.880)coding (529/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

TCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC.....................................................................  <  NC_014034/222048‑221953
.............................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCC  <  NC_014034/222128‑222073
                                                                                                |||||||||||||                                                        
TCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACC                                                                  <  1:2790264/101‑1 (MQ=0)
 CCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCC                                                                 <  2:4164793/101‑1 (MQ=0)
 CCCACGGACCGGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCGACGGACCC                                                                 >  1:4365902/1‑101 (MQ=0)
  cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                <  1:1491952/99‑1 (MQ=0)
   gACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA                                                               >  1:4918931/2‑101 (MQ=0)
   ccCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA                                                               <  1:4590839/99‑1 (MQ=0)
    ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGGCCCGAC                                                              >  1:3676861/1‑101 (MQ=0)
      GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                            >  1:4435786/1‑101 (MQ=0)
      GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGCCCG                                                            >  2:4102895/1‑101 (MQ=0)
      GGACCCGACCCATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                            <  2:576216/101‑1 (MQ=0)
       gacCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                                                           >  1:3362093/4‑101 (MQ=0)
        acCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGAc                                                          >  1:1534433/3‑100 (MQ=0)
         cCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATC                                                         <  2:907900/100‑1 (MQ=0)
          CCGACCGATCCCACGGACCCGACCTATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCC                                                        >  1:1665519/1‑101 (MQ=0)
            gtggGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCA                                                      >  2:4000632/5‑101 (MQ=0)
            GACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGCCCGATCCCA                                                      >  1:1399991/1‑101 (MQ=0)
            GACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACCGACCCGACCGATCCgc                                                      >  2:3175577/1‑99 (MQ=0)
            GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCGACGGACCCGACCGACCCCA                                                      >  1:289005/1‑101 (MQ=0)
             ACCGATCCCACGGACCCGACGGATCCCACGGACCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC                                                     <  1:674405/101‑1 (MQ=0)
              CCGATCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACG                                                    <  1:2017682/101‑1 (MQ=2)
               CGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGc                                                   >  2:4821217/1‑100 (MQ=0)
               CGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACACGACCGATCCGACGGACCCGACCGATCCCACGG                                                   >  2:441502/1‑101 (MQ=0)
                GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATGCGACGGACCCGACCGATCCCACCGA                                                  >  2:1146121/1‑101 (MQ=0)
                 ATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCCCGGAC                                                 >  1:1784591/1‑101 (MQ=0)
                 ATCCCACGAACCCGACCGATCCCACGGATCCAACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGAC                                                 <  1:4182538/101‑1 (MQ=0)
                    CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                              <  2:1364407/101‑1 (MQ=0)
                    CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                              <  1:4846360/101‑1 (MQ=0)
                    CCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                              <  1:1645632/101‑1 (MQ=0)
                    CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                              <  1:92785/101‑1 (MQ=0)
                     CACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGA                                             >  1:694419/1‑101 (MQ=0)
                     CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACGGATCCCACGGACCCGA                                             >  2:2345867/1‑101 (MQ=0)
                      ACGGCCCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGAC                                            <  1:1110213/101‑1 (MQ=0)
                      ACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGAC                                            >  2:4073156/1‑101 (MQ=0)
                       ctGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACC                                           <  1:341954/99‑1 (MQ=1)
                       CGGCCCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACC                                           <  1:2781043/101‑1 (MQ=0)
                       CGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACC                                           <  2:4711885/101‑1 (MQ=0)
                        GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACgg                                          >  2:1269246/1‑99 (MQ=9)
                        GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGAACCGACgg                                          >  2:3261507/1‑99 (MQ=9)
                        GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCTCACGGACCCGAGCG                                          >  2:4141322/1‑101 (MQ=0)
                        GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCCCGGACCCGACCG                                          >  2:4877601/1‑101 (MQ=0)
                         GACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGA                                         >  1:2388024/1‑101 (MQ=9)
                           CCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGAcc                                       >  1:124880/1‑99 (MQ=12)
                              GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGCCCGAACCCA                                    >  2:537950/1‑101 (MQ=2)
                                 CGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGG                                 >  2:2584961/1‑101 (MQ=0)
                                     CCCACGGATCCGACCGATCCCACGGACCCGCGCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                             <  1:879096/101‑1 (MQ=12)
                                     CCCACGGATCCCACCGATCCCACCGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCC                             <  2:1964867/101‑1 (MQ=12)
                                     CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGCTCC                             >  2:4669518/1‑101 (MQ=0)
                                       CACGGAGCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCca                           <  1:532930/101‑3 (MQ=0)
                                       CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACAGATCCCACGGACCCGACCGATCCCACGGACCCca                           >  1:4467127/1‑99 (MQ=0)
                                        ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCAC                          >  1:1913292/1‑101 (MQ=0)
                                        ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGATCCCAC                          >  2:4326875/1‑101 (MQ=0)
                                         CGGATCCGACCGAACCCACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACC                         <  1:4340622/101‑1 (MQ=0)
                                         CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACC                         >  1:4408746/1‑101 (MQ=0)
                                          GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGATCCCACCG                        >  1:1213004/1‑101 (MQ=0)
                                           gccCCGACCGATCCCACGGCCCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGA                       <  2:702032/98‑1 (MQ=0)
                                               CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATtcg                   <  1:3735981/101‑4 (MQ=0)
                                               CGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCC                   <  2:4006000/101‑1 (MQ=12)
                                                 ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGAC                 <  1:4734485/101‑1 (MQ=0)
                                                 ACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGAC                 <  1:4757247/101‑1 (MQ=0)
                                                    GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGCTCCGACGGA              >  1:478423/1‑101 (MQ=0)
                                                    GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGA              >  2:5005106/1‑101 (MQ=0)
                                                     ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGAC             >  1:3530553/1‑101 (MQ=11)
                                                     ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGAC             >  1:546986/1‑101 (MQ=11)
                                                     ATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGAC             >  2:3708140/1‑101 (MQ=11)
                                                      aCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACC            <  1:2414122/100‑1 (MQ=17)
                                                      TCCCACGGACCCGCCCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACC            <  1:1520636/101‑1 (MQ=9)
                                                      TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACC            >  1:2765296/1‑101 (MQ=14)
                                                       CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCC           <  2:4978312/101‑1 (MQ=17)
                                                       CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCCATCCCACGGATCCCACCGATCCGACGGACCC           >  1:4667223/1‑101 (MQ=12)
                                                        CCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCG          <  1:4503252/101‑1 (MQ=18)
                                                         CACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGATCCCACCGATCCGACGGACCCGA         >  1:3797117/1‑101 (MQ=12)
                                                          ACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGAC        <  1:608207/101‑1 (MQ=18)
                                                            GGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACCGACCCGACcg      >  1:3263898/1‑99 (MQ=2)
                                                                CCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC  <  2:3207787/101‑1 (MQ=0)
                                                                                                |||||||||||||                                                        
TCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC.....................................................................  <  NC_014034/222048‑221953
.............................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCC  <  NC_014034/222128‑222073

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG