New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221959 =415 (1.690)28 (0.110) 5/200 26.8 0.08 coding (698/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222129 238 (0.970)coding (528/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGA.........................................................  <  NC_014034/222057‑221959
...................................................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCC  <  NC_014034/222129‑222073
                                                                                                                                                            
CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC                                                         <  1:307033/101‑1 (MQ=14)
  CGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCC                                                       >  1:1926300/1‑101 (MQ=0)
   GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCc                                                      >  1:4690137/1‑100 (MQ=14)
    ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                     >  2:239454/1‑101 (MQ=0)
      CGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGG                                                   >  2:4428855/1‑101 (MQ=0)
      CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                   >  2:4946715/1‑101 (MQ=0)
      CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                   <  1:2774506/101‑1 (MQ=2)
       GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACcgc                                                  >  1:2075276/1‑98 (MQ=14)
       GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACCGACCCGACCGATCCCACGGACCCGACCGATCCCACCGACCCGACCGACCCCACGGc                                                  >  2:3166255/1‑100 (MQ=0)
        ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                 >  1:4820356/1‑101 (MQ=0)
        ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGCCCGACCCCACCGAC                                                 >  1:1458778/1‑101 (MQ=2)
           cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCCCGGACCCG                                              >  1:4648572/3‑101 (MQ=255)
           CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                                              <  1:4180069/101‑1 (MQ=0)
           CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                                              >  1:653991/1‑101 (MQ=0)
             ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                            <  2:777098/101‑1 (MQ=0)
              CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                           <  2:1222591/101‑1 (MQ=0)
              CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                           >  1:733085/1‑101 (MQ=0)
              CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                           <  1:3678473/101‑1 (MQ=0)
              CGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACC                                           <  1:39660/101‑1 (MQ=0)
               GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                          >  1:761381/1‑101 (MQ=0)
               GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                          >  1:2600570/1‑101 (MQ=0)
               GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                          <  1:2427144/101‑1 (MQ=0)
               GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCG                                          >  2:3409405/1‑101 (MQ=0)
                GATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGA                                         >  2:4952511/1‑101 (MQ=0)
                     GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCGACGGACCCGACCGACCCCA                                    >  1:289005/1‑101 (MQ=0)
                          ATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCCCCGGACCCGACCGATCCCACGGAc                               >  1:2029629/1‑100 (MQ=2)
                                               CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG          <  1:92785/101‑1 (MQ=0)
                                                       CCGCCCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC  <  2:3207787/101‑1 (MQ=0)
                                                                                                                                                            
CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGA.........................................................  <  NC_014034/222057‑221959
...................................................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCC  <  NC_014034/222129‑222073

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 41 ≤  ATCG