New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221968 =709 (2.920)74 (0.310) 7/198 25.1 0.12 coding (689/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222119 335 (1.370)coding (538/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA.........................................................  <  NC_014034/222065‑221968
...................................................................................................CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCC  <  NC_014034/222119‑222064
                                                                                                  |                                                        
CCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                        <  1:385135/101‑1 (MQ=12)
 CTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                                                       <  2:2965383/101‑1 (MQ=9)
  TACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA                                                      >  2:201968/1‑101 (MQ=2)
   ACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                                                     >  2:4813974/1‑101 (MQ=0)
   ACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                                                     >  1:852812/1‑101 (MQ=0)
     GGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCG                                                   >  2:744188/1‑101 (MQ=0)
     GGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCG                                                   >  1:2473067/1‑101 (MQ=0)
      GACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGA                                                  >  2:272983/1‑101 (MQ=0)
       ACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAT                                                 >  2:3150690/1‑101 (MQ=2)
         CCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                                               >  1:1405262/1‑101 (MQ=2)
           GACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCc                                             >  1:3782023/1‑100 (MQ=2)
             CCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG                                           >  2:2116089/1‑101 (MQ=2)
             CCGATCCCACGGATCCGACCGATCCCGCGGATCCGACCGATCCCACGGATCCGCCCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACG                                           <  1:2170178/101‑1 (MQ=0)
              CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                          <  1:2774506/101‑1 (MQ=2)
               GATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                                         >  1:3195730/1‑101 (MQ=0)
                ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGAGCCCACGGAc                                        >  2:487799/1‑100 (MQ=9)
                ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAc                                        >  1:4820356/1‑100 (MQ=0)
                           CCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                             <  2:3190443/101‑1 (MQ=0)
                           CCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                             <  1:1811687/101‑1 (MQ=0)
                           CCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                             <  1:1310692/101‑1 (MQ=0)
                           CCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGAGCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                             >  2:1042689/1‑101 (MQ=0)
                            CGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC                            <  2:2714291/101‑1 (MQ=0)
                            CGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC                            <  2:4126767/101‑1 (MQ=0)
                            CGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC                            <  1:3426458/101‑1 (MQ=0)
                            CGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC                            <  2:1381607/101‑1 (MQ=0)
                             GACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                           >  1:828142/1‑101 (MQ=0)
                             GACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                           <  2:2486897/101‑1 (MQ=0)
                              ACCGATGCCACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                          <  1:2443903/101‑1 (MQ=12)
                              ACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                          <  2:3316633/101‑1 (MQ=0)
                              ACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                          >  2:521031/1‑101 (MQ=0)
                               ccaATCCCACCGACCCGACCGATCCCACGGATCCGACCGACCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG                         <  2:3707982/98‑1 (MQ=0)
                               CCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG                         <  1:1042799/101‑1 (MQ=0)
                               CCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG                         <  1:1185566/101‑1 (MQ=0)
                               CCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG                         <  2:1711200/101‑1 (MQ=0)
                                CGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGc                        >  1:1569239/1‑100 (MQ=0)
                                CGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG                        >  2:4697150/1‑101 (MQ=0)
                                CGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG                        >  2:33789/1‑101 (MQ=0)
                                CGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG                        <  1:2950469/101‑1 (MQ=0)
                                 GATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGc                       >  2:2784804/1‑100 (MQ=0)
                                 GATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                       >  1:3653983/1‑101 (MQ=0)
                                 GATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                       >  1:3325267/1‑101 (MQ=0)
                                 GATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                       >  2:470031/1‑101 (MQ=0)
                                 GATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                       >  1:3042694/1‑101 (MQ=0)
                                 GATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                       >  2:2082520/1‑101 (MQ=0)
                                 GATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                       >  1:265551/1‑101 (MQ=0)
                                   TCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACC                     <  1:371912/101‑1 (MQ=9)
                                   TCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACC                     >  2:2495513/1‑101 (MQ=9)
                                   TCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACC                     <  1:592315/101‑1 (MQ=9)
                                    cctACGGATCCGACCGATCCCACGGATCCGNCCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                    <  1:3021164/98‑1 (MQ=12)
                                    cctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                    <  1:1307073/98‑1 (MQ=12)
                                    cctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                    <  2:3303988/98‑1 (MQ=12)
                                    CCCACGGACCCGCCCGATCCCACGGATCCGCCCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                    <  2:3423102/101‑1 (MQ=0)
                                    CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCC                    >  1:3970645/1‑101 (MQ=9)
                                     ctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG                   <  2:4877827/99‑1 (MQ=17)
                                     CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                   <  1:2197963/101‑1 (MQ=18)
                                     CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                   <  1:1520048/101‑1 (MQ=18)
                                     CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                   <  2:3771123/101‑1 (MQ=18)
                                     CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCG                   <  1:1429345/101‑1 (MQ=18)
                                      tACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGA                  <  2:4994260/100‑1 (MQ=17)
                                      tACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGA                  <  1:139366/100‑1 (MQ=17)
                                      CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGA                  >  1:2901654/1‑101 (MQ=18)
                                       gCGGACCCGACCGATCCCGCGGATCCGGCCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                 <  1:2944291/100‑1 (MQ=12)
                                       ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC                 >  1:667557/1‑101 (MQ=17)
                                         GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCGACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGG               >  2:691844/1‑101 (MQ=12)
                                         GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACcg               >  2:2834383/1‑99 (MQ=11)
                                          gatCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA              >  1:366654/4‑101 (MQ=0)
                                          gatCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA              >  1:973790/4‑101 (MQ=0)
                                           atCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGcccgat             >  1:4639456/3‑95 (MQ=0)
                                            CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACC            <  1:307033/101‑1 (MQ=14)
                                               GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCcc         >  1:4690137/1‑99 (MQ=14)
                                                ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC        >  2:239454/1‑101 (MQ=0)
                                                  CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACgg      >  2:4946715/1‑99 (MQ=0)
                                                   GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACCGc     >  1:2075276/1‑100 (MQ=14)
                                                      CCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACCGACCC  >  1:4588052/1‑101 (MQ=0)
                                                                                                  |                                                        
CCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA.........................................................  <  NC_014034/222065‑221968
...................................................................................................CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCC  <  NC_014034/222119‑222064

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG