New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 222040 =1027 (5.180)2 (0.010) 13/162 18.5 0.00 coding (617/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222101 290 (1.180)coding (556/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

ATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGA...................................................................................................................  <  NC_014034/222139‑222040
.......................................................................................................................CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG  <  NC_014034/222101‑222006
                                                                                                    |||||||||||||||||||                                                                                                
ATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGAC                                                                                                                    >  2:4779616/1‑101 (MQ=1)
 TCCCCCCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACC                                                                                                                   <  1:166730/101‑1 (MQ=1)
 TCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGGCCGATCCTACGGACCCGACCGATCCCACGGACC                                                                                                                   >  2:3126251/1‑101 (MQ=1)
 TCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACC                                                                                                                   >  2:3505067/1‑101 (MQ=1)
 TCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACC                                                                                                                   <  1:329786/101‑1 (MQ=1)
 TCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGACCCCACGGCCC                                                                                                                   >  1:782541/1‑101 (MQ=17)
  CCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGAACGATCCTACGGACCCGACCGATCCCACGGACCC                                                                                                                  >  1:4382776/1‑101 (MQ=1)
    CACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGA                                                                                                                <  1:3042187/101‑1 (MQ=31)
     cCCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGAC                                                                                                               <  1:4042732/100‑1 (MQ=17)
     cCCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGAC                                                                                                               <  2:2760604/100‑1 (MQ=17)
     cCCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGACCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGAC                                                                                                               <  2:2787306/100‑1 (MQ=17)
     ACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGAC                                                                                                               <  2:2930897/101‑1 (MQ=32)
      CCAGCCCCACGGACCGGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACC                                                                                                              <  2:4199370/101‑1 (MQ=18)
      CCAGCCCCACGGACCCGAGCGATCCCACGCATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACC                                                                                                              <  2:837070/101‑1 (MQ=16)
      CCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACC                                                                                                              <  1:3911797/101‑1 (MQ=33)
      CCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACC                                                                                                              <  2:2613159/101‑1 (MQ=33)
       CAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCG                                                                                                             <  2:2947973/101‑1 (MQ=33)
       CAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCG                                                                                                             <  2:3135755/101‑1 (MQ=33)
         GCCCCCCGGACCCGCCCGATCCCACGGATCCGACCGATCCCACGGGCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGAT                                                                                                           <  2:4548588/101‑1 (MQ=255)
         GCCCCAGGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGCCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGAT                                                                                                           <  2:998057/101‑1 (MQ=16)
         GCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGAT                                                                                                           >  1:1267042/1‑101 (MQ=33)
          CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATC                                                                                                          >  2:4011507/1‑101 (MQ=32)
          CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATC                                                                                                          >  2:4887205/1‑101 (MQ=32)
           CCCCCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCC                                                                                                         <  1:3505337/101‑1 (MQ=17)
           CCCACGGCCCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCC                                                                                                         <  2:3522013/101‑1 (MQ=17)
            ccgCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                        <  2:4532456/98‑1 (MQ=17)
            cccCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                        <  1:93717/98‑1 (MQ=17)
            CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGCCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                        <  1:746176/101‑1 (MQ=17)
            CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGCTCCCACGGACCCGACCGCTCCC                                                                                                        >  2:2381782/1‑101 (MQ=12)
            CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCC                                                                                                        <  2:3877742/101‑1 (MQ=32)
              cCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC                                                                                                      <  2:1246292/100‑1 (MQ=18)
              ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC                                                                                                      <  1:1382116/101‑1 (MQ=33)
              ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC                                                                                                      <  1:3907475/101‑1 (MQ=33)
              ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC                                                                                                      <  1:3848693/101‑1 (MQ=33)
              ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC                                                                                                      >  1:1712233/1‑101 (MQ=32)
               CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACG                                                                                                     <  2:4890639/101‑1 (MQ=33)
               CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACG                                                                                                     <  2:603241/101‑1 (MQ=33)
               CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACG                                                                                                     <  1:3213100/101‑1 (MQ=32)
                GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACGGATCCCACGGACCCAACCGATCCAACcg                                                                                                    >  2:4204744/1‑99 (MQ=255)
                GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCAacg                                                                                                    >  1:2173551/1‑98 (MQ=17)
                GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGG                                                                                                    <  1:4879052/101‑1 (MQ=33)
                GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGG                                                                                                    >  2:1039859/1‑101 (MQ=32)
                GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGG                                                                                                    >  1:3987975/1‑101 (MQ=32)
                  ACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAC                                                                                                  >  1:4569042/1‑101 (MQ=32)
                   CCCGGCCGAGCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACC                                                                                                 <  2:4779376/101‑1 (MQ=0)
                   CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCCACCGATCCCACGGACC                                                                                                 >  1:5046256/1‑101 (MQ=17)
                    CCGCCCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCC                                                                                                <  2:3021479/101‑1 (MQ=18)
                    CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCC                                                                                                <  1:1628652/101‑1 (MQ=33)
                     CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCc                                                                                               <  1:2484252/101‑2 (MQ=14)
                     CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCc                                                                                               <  1:871908/101‑2 (MQ=17)
                      ggCCGATCCCGCGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCca                                                                                              <  2:4053506/99‑3 (MQ=2)
                      GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCca                                                                                              >  1:3524548/1‑99 (MQ=11)
                       ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCAC                                                                                             <  2:3068166/101‑1 (MQ=11)
                       ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCAC                                                                                             <  1:1896828/101‑1 (MQ=11)
                        CCGATCCCACCGATCCGACCGATCCCACGGGCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACC                                                                                            <  2:3314181/101‑1 (MQ=12)
                         CGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCcccgg                                                                                           >  1:3967990/1‑96 (MQ=11)
                           ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCCACGGAc                                                                                         >  1:2462228/1‑100 (MQ=0)
                           ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGAT                                                                                         >  2:3505279/1‑101 (MQ=11)
                           ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACAGAT                                                                                         >  2:917633/1‑101 (MQ=0)
                            TCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCcccggacc                                                                                        >  1:1328632/1‑93 (MQ=0)
                             CCCACGGATCCGACCGATCCCACGGCCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCC                                                                                       <  2:1899169/101‑1 (MQ=9)
                             CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCC                                                                                       <  2:263828/101‑1 (MQ=14)
                              CCACGGATCCGACCGATCCCACGGACCCGACGGACCTGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCg                                                                                      <  2:2586806/101‑2 (MQ=12)
                              CCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCg                                                                                      <  1:3239207/101‑2 (MQ=17)
                              CCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCg                                                                                      <  2:4229141/101‑2 (MQ=17)
                                 CGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACc                                                                                   <  2:5030160/101‑2 (MQ=17)
                                  GGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACcg                                                                                  >  1:2392249/1‑99 (MQ=17)
                                    ATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCCCGGACCCGACCGATCCCACGGACCCCACCGATCCCACCGAt                                                                                >  1:3708260/1‑100 (MQ=255)
                                            GATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGc                                                                        >  2:1299967/1‑100 (MQ=0)
                                                   CGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACg                                                                 >  2:649664/1‑100 (MQ=255)
                                                                                              tACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCA                      <  2:4544349/100‑1 (MQ=2)
                                                                                               ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCAC                     <  1:5030881/101‑1 (MQ=0)
                                                                                               ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCAC                     <  1:4791179/101‑1 (MQ=0)
                                                                                                CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACG                    >  2:3887955/1‑101 (MQ=0)
                                                                                                 GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGG                   <  1:4127559/101‑1 (MQ=0)
                                                                                                   gCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGAC                 <  1:2435763/100‑1 (MQ=0)
                                                                                                     CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC               <  1:557506/101‑1 (MQ=0)
                                                                                                        ACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC            >  1:2798854/1‑101 (MQ=0)
                                                                                                        ACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC            <  2:1934282/101‑1 (MQ=0)
                                                                                                          CGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCG          >  1:3970252/1‑101 (MQ=0)
                                                                                                                CACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA    <  1:4474281/101‑1 (MQ=0)
                                                                                                                 ACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC   <  1:2490084/101‑1 (MQ=0)
                                                                                                                  CGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG  <  2:3957605/101‑1 (MQ=0)
                                                                                                    |||||||||||||||||||                                                                                                
ATCCCACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGA...................................................................................................................  <  NC_014034/222139‑222040
.......................................................................................................................CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG  <  NC_014034/222101‑222006

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG