New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2330175	41 (0.170)	53 (0.220)	7/200	25.2	0.39	intergenic (+150/+162)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	= 3276388	125 (0.510)					intergenic (‑140/+109)	RCAP_rcc03082/RCAP_rcc03083	lipoprotein/membrane bound YbgT‑like protein
Rejected: Position hash score below cutoff.

GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCG..........................................  >  NC_014034/2330076‑2330175 .....................................................................................................GGGGGCTCCGCCCCCGGACCCCCGGCGTATTTGGGCCAAGAA  <  NC_014034/3276388‑3276347                                                                                                                                                 GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGGCCC.CGGGGG                                           >  1:1126590/1‑101 (MQ=0)  GCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGGGGG                                          >  2:4251068/1‑101 (MQ=1)   CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGG                                         >  1:4684641/1‑101 (MQ=1)    TTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGG                                        >  2:4047545/1‑101 (MQ=1)    TTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGG                                        >  1:4153193/1‑101 (MQ=1)     TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGc                                       <  1:21854/101‑2 (MQ=1)     TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGc                                       >  1:564971/1‑100 (MQ=1)     TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGG                                       >  1:1180639/1‑101 (MQ=1)      GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGGCGGGGGG                                       >  2:1833358/1‑101 (MQ=0)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGGTCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGctcc                                    <  1:771653/101‑5 (MQ=1)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGctcc                                    <  1:1201483/101‑5 (MQ=1)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGctcc                                    <  2:3711830/101‑5 (MQ=1)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGctcc                                    <  2:572004/101‑5 (MQ=1)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGctcc                                    <  1:4081553/101‑5 (MQ=1)         CTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGGGGGGGGgccc                                   >  1:4793234/1‑97 (MQ=0)           CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGGGGGGGGggggcg                                 >  2:4254407/1‑95 (MQ=0)              CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCC                             <  2:2559844/101‑1 (MQ=1)              CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCC                             <  2:1686544/101‑1 (MQ=1)              CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCC                             <  2:4748093/101‑1 (MQ=1)              CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCC                             <  1:905673/101‑1 (MQ=1)              CCAAGGGCGGCAACGGCGCGCAGAGCCCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCC                             <  2:741082/101‑1 (MQ=1)               CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGGGCCCCCCCCC                             >  2:2877786/1‑101 (MQ=0)                AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGG.TGCGCCCCCGc                           >  2:494736/1‑100 (MQ=0)                AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGc                           >  2:3131150/1‑100 (MQ=1)                AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGc                           >  2:1953783/1‑100 (MQ=1)                AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGc                           >  2:4562056/1‑100 (MQ=1)                     CGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCC                      <  1:4154730/101‑1 (MQ=1)                     CGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCC                      <  1:4251385/101‑1 (MQ=1)                      GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCTCCCCC                     <  1:464253/101‑1 (MQ=1)                      GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCC                     <  2:4462890/101‑1 (MQ=1)                      GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCC                     <  2:2863140/101‑1 (MQ=1)                       GCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCG                    <  2:1830716/101‑1 (MQ=1)                         AACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGCCCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGC                  <  1:3402427/101‑1 (MQ=1)                         AACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGC                  <  1:4072035/101‑1 (MQ=1)                            GGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTA               <  2:4125038/101‑1 (MQ=1)                            GGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTA               <  2:90493/101‑1 (MQ=1)                            GGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTA               <  1:1451432/101‑1 (MQ=1)                              CGCGCAGAGCGCCGCCCGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATT             <  1:1260472/101‑1 (MQ=1)                              CGCGCAGAGCGCCGCCCGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATT             <  2:1586182/101‑1 (MQ=1)                              CGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATT             <  1:669691/101‑1 (MQ=1)                               GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATTT            <  1:81999/101‑1 (MQ=1)                               GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATTT            <  1:631406/101‑1 (MQ=1)                               GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATTT            <  2:4447053/101‑1 (MQ=1)                               GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATTT            <  2:4919730/101‑1 (MQ=1)                               GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCCGCGTATTT            >  2:3618394/1‑101 (MQ=1)                                CGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTG           <  2:725545/101‑1 (MQ=1)                                CGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTG           <  1:2995122/101‑1 (MQ=1)                                CGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTG           <  2:3496154/101‑1 (MQ=1)                                   AGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGC        <  1:480302/101‑1 (MQ=1)                                     AGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCA      <  1:3967207/101‑1 (MQ=1)                                     AGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCA      <  1:4254724/101‑1 (MQ=1)                                         CCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAA  <  1:3040680/101‑1 (MQ=1)                                         CCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAA  <  2:1105057/101‑1 (MQ=1)                                                                                                                                                 GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCG..........................................  >  NC_014034/2330076‑2330175 .....................................................................................................GGGGGCTCCGCCCCCGGACCCCCGGCGTATTTGGGCCAAGAA  <  NC_014034/3276388‑3276347 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG