New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	235596 =	153 (0.620)	24 (0.100)	5/200	26.8	0.18	intergenic (+25/+186)	RCAP_rcc00200/RCAP_rcc00201	MarR family transcriptional regulator/adenine‑specific DNA‑methyltransferase
	?	NC_014034	900797 =	65 (0.270)					intergenic (‑126/‑161)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
Rejected: Position hash score below cutoff.

GTGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGG...................................................................................................  <  NC_014034/235695‑235596 ....................................................................................................GCGGAG..CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGA  >  NC_014034/900797‑900893                                                                                                                                                                                                         GTGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGG                                                                                                    >  2:1690681/1‑101 (MQ=255)  TGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGg                                                                                                   >  2:2590909/1‑100 (MQ=255)  TGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGg                                                                                                   >  2:1889720/1‑100 (MQ=255)  TGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGg                                                                                                   >  1:925262/1‑100 (MQ=255)   GAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgc                                                                                                  >  2:4449021/1‑99 (MQ=255)   GAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgc                                                                                                  >  2:428939/1‑99 (MQ=255)   GAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgc                                                                                                  >  2:2867197/1‑99 (MQ=255)   GAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgc                                                                                                  >  1:4453575/1‑99 (MQ=255)    AAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcg                                                                                                 >  1:1060797/1‑98 (MQ=255)     AGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAACCCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcgg                                                                                                <  2:2810022/101‑5 (MQ=255)     AGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcgg                                                                                                >  1:1569754/1‑97 (MQ=255)        CTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaa                                                                                             <  2:4682582/101‑8 (MQ=255)        CTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaa                                                                                             >  2:987021/1‑94 (MQ=255)         TGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaag                                                                                            <  2:3207251/101‑9 (MQ=255)           CGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaagcc                                                                                          >  1:1504851/1‑91 (MQ=255)                                                                                           GGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTT          >  2:780808/1‑101 (MQ=34)                                                                                               GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGC      >  2:2886669/1‑101 (MQ=31)                                                                                                CGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCT     >  1:1163885/1‑101 (MQ=11)                                                                                                 GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA    >  1:4138075/1‑101 (MQ=1)                                                                                                 GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA    >  2:1319837/1‑101 (MQ=1)                                                                                                 GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA    >  1:2052118/1‑101 (MQ=1)                                                                                                 GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA    >  1:1273078/1‑101 (MQ=1)                                                                                                  GGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAG   >  2:4359155/1‑101 (MQ=1)                                                                                                   GGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGA  <  1:805871/101‑1 (MQ=1)                                                                                                                                                                                                         GTGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGG...................................................................................................  <  NC_014034/235695‑235596 ....................................................................................................GCGGAG..CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGA  >  NC_014034/900797‑900893 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG