New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_014034 | 300770 = | 266 (1.110) | 58 (0.240) | 24/196 | 16.1 | 0.27 | intergenic (+123/+21) | RCAP_rcc00263/RCAP_rcc00264 | winged helix family two component transcriptional regulator/hypothetical protein |
? | NC_014034 | 1255906 = | 42 (0.170) | intergenic (+76/+166) | RCAP_rcc01184/RCAP_rcc01185 | CsbD family protein/methyl‑accepting chemotaxis sensory transducer | |||||
Rejected: Position hash score below cutoff. |
CCGATTACCTGGAAGACGGTCTGAATGCGATGGGGATCAGCCTGGAAGAAGCCGAGGACGGCATCAATCCGACGGTGTAGGGGGGGCGCTGCCCCCCGTCC.................................................................................................... < NC_014034/300870‑300770
....................................................................................................CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTCCCGA > NC_014034/1255906‑1256005
ccgaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAA < 2:2376940/95‑1 (MQ=0)
ccgaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAA < 2:1860024/95‑1 (MQ=0)
cgaaggGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAA < 1:1732951/95‑1 (MQ=0)
cgaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAA < 1:4952804/96‑1 (MQ=0)
cgaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAA < 1:627349/96‑1 (MQ=0)
cgaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAA < 2:1119881/96‑1 (MQ=0)
cgaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAA < 2:380016/96‑1 (MQ=0)
gaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAAT > 2:3338605/5‑101 (MQ=0)
gaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAAT < 2:2487914/97‑1 (MQ=0)
gaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAAT < 1:4767140/97‑1 (MQ=0)
aagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATA < 1:4303113/98‑1 (MQ=0)
aagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATA < 1:4081421/98‑1 (MQ=0)
aagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATA < 2:3557168/98‑1 (MQ=0)
aagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATA < 1:2122174/98‑1 (MQ=0)
agAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATAT < 1:3002992/99‑1 (MQ=0)
agAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATAT > 2:2228324/3‑101 (MQ=0)
agAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATAT > 2:672910/3‑101 (MQ=0)
agAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATAT < 1:5046354/99‑1 (MQ=0)
agAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATAT < 2:2965004/99‑1 (MQ=0)
gAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATC < 1:492849/100‑1 (MQ=0)
gAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATC < 1:4136885/100‑1 (MQ=0)
gAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATC > 1:3474237/2‑101 (MQ=0)
gAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATC < 1:3338868/100‑1 (MQ=0)
gAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATC < 2:1171050/100‑1 (MQ=0)
gAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATC > 2:2167930/2‑101 (MQ=0)
gAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATC < 2:3204991/100‑1 (MQ=0)
AGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCC > 1:145584/1‑101 (MQ=1)
AGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCC > 1:4107497/1‑101 (MQ=1)
AGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCC < 1:2142267/101‑1 (MQ=1)
GGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCC < 2:1182166/101‑1 (MQ=1)
GGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCC < 1:2173829/101‑1 (MQ=1)
GGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCG < 1:4015797/101‑1 (MQ=1)
GGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCG > 1:3309940/1‑101 (MQ=1)
GGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCG > 2:2832019/1‑101 (MQ=1)
GGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGG > 1:2530452/1‑101 (MQ=1)
GGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGG < 2:2864845/101‑1 (MQ=1)
GGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGG < 2:4675800/101‑1 (MQ=1)
GCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGG < 1:2083646/101‑1 (MQ=1)
GCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGG < 2:3466873/101‑1 (MQ=1)
GCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGG < 2:1764198/101‑1 (MQ=1)
GCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGG > 1:4844195/1‑101 (MQ=1)
CTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGG > 2:183270/1‑101 (MQ=1)
ccCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCCCCTTGGGCCAAATATCCCGGGGGGGGGG < 2:4295401/99‑1 (MQ=0)
TGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGG < 1:3275112/101‑1 (MQ=1)
GCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCCCCTTGGGCCAAATATCCCGGGGGGGGGGA < 2:829012/101‑1 (MQ=0)
GCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGg > 2:4410361/1‑100 (MQ=0)
GCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGA < 2:2940760/101‑1 (MQ=1)
GCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGA < 1:4634084/101‑1 (MQ=1)
GCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGA > 1:1667949/1‑101 (MQ=1)
CCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAA > 2:3338797/1‑101 (MQ=1)
CCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAA < 1:732774/101‑1 (MQ=1)
CCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGCAC > 2:3002205/1‑101 (MQ=0)
CCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCCCCTTGGGCCAAATATCCCGGGGGGGGGGAACT < 1:4927706/101‑1 (MQ=0)
ccccgCCCCTGCGGGCCTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACT < 2:3501353/96‑1 (MQ=0)
CCCGT.CCCTGCGGGCCTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTT < 1:5003270/101‑1 (MQ=0)
CCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCTCCTTGGGCCAAATATCCCGGGGGGGGGGAACTc > 2:759744/1‑100 (MQ=0)
CCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTT > 1:2720279/1‑101 (MQ=1)
CCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTT > 1:2402168/1‑101 (MQ=1)
CCGATTACCTGGAAGACGGTCTGAATGCGATGGGGATCAGCCTGGAAGAAGCCGAGGACGGCATCAATCCGACGGTGTAGGGGGGGCGCTGCCCCCCGTCC.................................................................................................... < NC_014034/300870‑300770
....................................................................................................CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTCCCGA > NC_014034/1255906‑1256005
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 34 ≤
ATCG
< 40 ≤
ATCG
|