New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	300770 =	266 (1.110)	58 (0.240)	24/196	16.1	0.27	intergenic (+123/+21)	RCAP_rcc00263/RCAP_rcc00264	winged helix family two component transcriptional regulator/hypothetical protein
	?	NC_014034	1255906 =	42 (0.170)					intergenic (+76/+166)	RCAP_rcc01184/RCAP_rcc01185	CsbD family protein/methyl‑accepting chemotaxis sensory transducer
Rejected: Position hash score below cutoff.

AGGGGTGCCGGACCGGAACCGGGGGCCTTCGG....CTG.TCTCGGTCCGCCCGAAGAGGGGGGGCGCTGTGGTAC..CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTCCCGAA  >  NC_014034/1255834‑1256006                                                                                |                                                                                                     aGGGGTGCCGGACCGGAGCCGGGGGCTTTCGGGCCCCCGCTTTCGGTCCGGCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCGCCGGGat                                                                                 <  2:587429/101‑1 (MQ=0)       gCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTTTCGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCCTCCCTGCGGGGCCCCCCCCCGGGTATTTcc                                                                           >  1:3072193/1‑101 (MQ=2)                                  cccccgctttcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGcgcg                                                <  1:2176047/92‑1 (MQ=17)                                   ccccgctttcGGTCCGCCCGAAGAGGGGGGGCGCTTCCCCCCGTACCTGCGGGACTCCCCCCGGGATGTTTCCGCCGAGTGGAAAAGAACCCGGGGCGCgg                                               >  2:2406975/9‑101 (MQ=9)                                      cgctttcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCtt                                            <  1:4393825/96‑1 (MQ=18)                                       gctttcGGTCCTCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCttt                                           <  1:1870925/97‑1 (MQ=17)                                       gctttcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCttt                                           <  1:245022/97‑1 (MQ=18)                                       gctttcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCttt                                           >  1:3513186/5‑101 (MQ=18)                                         tttcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCa                                         >  2:1754781/3‑101 (MQ=18)                                          ttcGGTCCGCCCGAAGAGGGGGGGCGCGGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCAc                                        <  2:2679468/100‑1 (MQ=18)                                           tcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCAcc                                       >  2:2435586/1‑101 (MQ=18)                                           tcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCAcc                                       <  1:2051458/101‑1 (MQ=18)                                            ctgTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCt                                      >  2:2083498/3‑101 (MQ=18)                                             ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCNCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt                                     <  1:2354761/101‑1 (MQ=21)                                             ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt                                     >  2:3428714/1‑101 (MQ=18)                                             ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt                                     <  1:92121/101‑1 (MQ=18)                                             ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt                                     <  1:16308/101‑1 (MQ=18)                                             ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt                                     >  1:2037799/1‑101 (MQ=18)                                             ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt                                     >  1:1066288/1‑101 (MQ=18)                                             ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt                                     >  1:2264675/1‑101 (MQ=18)                                              gTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTg                                    <  1:4460789/101‑1 (MQ=18)                                              gTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTg                                    >  1:2940988/1‑101 (MQ=18)                                               tCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTgg                                   <  1:3094146/101‑1 (MQ=18)                                               tCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTgg                                   <  1:3689456/101‑1 (MQ=18)                                                ccGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTggg                                  <  2:4297639/101‑1 (MQ=18)                                                ccGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTggg                                  >  2:2001218/1‑101 (MQ=18)                                                 cGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGc                                 <  2:1346129/101‑1 (MQ=18)                                                   cccGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCa                               <  1:2015757/101‑1 (MQ=18)                                                    ccGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaa                              <  2:2376940/101‑1 (MQ=18)                                                    ccGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaa                              <  2:1860024/101‑1 (MQ=18)                                                     cGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaaa                             <  1:627349/101‑1 (MQ=18)                                                     cGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaaa                             <  2:380016/101‑1 (MQ=18)                                                     cGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaaa                             <  2:1119881/101‑1 (MQ=18)                                                     cGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaaa                             <  1:4952804/101‑1 (MQ=18)                                                                     tgccccccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCGAGGGGAAATGAACCCGGGGCGCGGCTTTCCCCTTGGGCCAAATATCCCgggggggggg             >  2:2576691/11‑101 (MQ=18)                                                                     tgccccccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCgggggggggg             <  1:3275112/91‑1 (MQ=255)                                                                     ccccccccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCCCCTTGGGCCAAATATCCCgggggggggg             <  2:4295401/91‑1 (MQ=21)                                                                      gccccccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCCCCTTGGGCCAAATATCCCGGGGGGGGGGa            <  2:829012/92‑1 (MQ=21)                                                                      gccccccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCggggggggggg            >  2:4410361/10‑100 (MQ=255)                                                                      gccccccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGa            >  1:1667949/10‑101 (MQ=255)                                                                      gccccccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGa            <  1:4634084/92‑1 (MQ=255)                                                                      gccccccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGa            <  2:2940760/92‑1 (MQ=255)                                                                      cccccccttcccTGAGGGTCTGCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGCCTTTCACGTTGGGCCAAATTTCCCGGGGGGGGGGa            <  2:3371501/92‑1 (MQ=255)                                                                       ccccgc..cccTGCGGGCCTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACt         <  2:3501353/96‑1 (MQ=255)                                                                       ccccccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGaa           <  1:732774/93‑1 (MQ=255)                                                                       ccccccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGaa           >  2:3338797/9‑101 (MQ=255)                                                                        cccccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGCAc          >  2:3002205/8‑101 (MQ=255)                                                                         ccccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCCCCTTGGGCCAAATATCCCGGGGGGGGGGAACt         <  1:4927706/95‑1 (MQ=255)                                                                          cccgtcccTGCGGGCCTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACtt        <  1:5003270/96‑1 (MQ=255)                                                                          cccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCTCCTTGGGCCAAATATCCCGGGGGGGGGGAACtc        >  2:759744/6‑100 (MQ=255)                                                                          cccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACtt        >  1:2720279/6‑101 (MQ=255)                                                                          cccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACtt        >  1:2402168/6‑101 (MQ=255)                                                                          cccctcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCC.GGGGGGGGGAACTTc       <  2:168078/96‑1 (MQ=255)                                                                           ccgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTc       >  2:283333/5‑101 (MQ=255)                                                                           ccgtcccTGCGGGACCCCCCCCGGGATATTTCCGCCAAGGGGAAATGACCCCGGGGCGCGGCTTTCCCCTTGGGCCAAATATCCCGGGGGGGGGGAACTTc       <  2:3441371/97‑1 (MQ=21)                                                                            cgtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTcc      >  1:2855305/4‑101 (MQ=255)                                                                             gtcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTccc     >  2:1466486/3‑101 (MQ=255)                                                                              tcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCCCCTTGGGCCAAATATCCCGGGGGGGGGGAACTTCCCg    <  2:4107180/100‑1 (MQ=255)                                                                              tcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTcccc    >  2:706835/2‑100 (MQ=255)                                                                              tcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTCCCg    <  1:2168085/100‑1 (MQ=255)                                                                              tcccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCC.GGGGGGGGGAACTTCCCgc   <  2:3873504/100‑2 (MQ=255)                                                                               cccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTCCCga   >  1:483523/1‑101 (MQ=255)                                                                               cccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTCCCga   >  1:4696566/1‑101 (MQ=255)                                                                                ccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTCCCgaa  >  1:252057/1‑101 (MQ=255)                                                                                ccTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTCCCgaa  >  2:952867/1‑101 (MQ=255)                                                                                |                                                                                                     AGGGGTGCCGGACCGGAACCGGGGGCCTTCGG....CTG.TCTCGGTCCGCCCGAAGAGGGGGGGCGCTGTGGTAC..CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTCCCGAA  >  NC_014034/1255834‑1256006 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG