New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	3199644 =	246 (1.130)	3 (0.010)	2/178	28.2	0.01	coding (262/468 nt)	RCAP_rcc03008	hypothetical protein
	?	NC_014034	3632094 =	246 (1.000)					intergenic (+40/‑10)	RCAP_rcc03429/livM3	hypothetical protein/branched‑chain amino acid ABC transporter permease LivM
Rejected: Position hash score below cutoff.

ATGTCGGCAGCCTCTGGATGGCGGGCGGCAAGGCGAAATATTACAGCCACCTCGGCGGCTGGTATGCGGCGACCGGCGGCAATACCGCGCAGGTCGATGGCATCACCGGGG....................................................................................................  <  NC_014034/3199754‑3199644 ....................................................................................................CATCACCGGGGGGAGGCTCTGATGTTTTACCGCGAAGCAGGCGATTTCAAGACAAGCTACCGCGCCGACAGCCAGACCTTTCCGATCCGTCTGGACCGGATGGGATATTTC  >  NC_014034/3632094‑3632193                                                                                                                                                                                                                                      ATGGCGGGCGGCAAGGCGAAATATTACAGCCACCTCGGCGGCTGGTATGCGGCGACCGGCGGCAATACCGCGCAGGTCGATGGCATCACCGGGGGctcagg                                                                                               >  2:4258202/1‑95 (MQ=255)                                                        gatCTGGTATGCGGCGACCGGCGGCAATACCGCGCAGGTCGATGGCATCACCGGGGGGAGGCTCTGATGTTTTACCGCGAAGCAGGCGATTTCAAGACAAG                                                         <  1:4144143/98‑1 (MQ=255)                                                             GGTATGCGGCGACCGGCGGCAATACCGCGCAGGTCGATGGCATCACCGGGGGGAGGCTCTGATGTTTTACCGCGAAGCAGGCGATTTCAAGACAAGagatc                                                    >  2:4143826/1‑96 (MQ=255)                                                                                                                                                                                                                     ATGTCGGCAGCCTCTGGATGGCGGGCGGCAAGGCGAAATATTACAGCCACCTCGGCGGCTGGTATGCGGCGACCGGCGGCAATACCGCGCAGGTCGATGGCATCACCGGGG....................................................................................................  <  NC_014034/3199754‑3199644 ....................................................................................................CATCACCGGGGGGAGGCTCTGATGTTTTACCGCGAAGCAGGCGATTTCAAGACAAGCTACCGCGCCGACAGCCAGACCTTTCCGATCCGTCTGGACCGGATGGGATATTTC  >  NC_014034/3632094‑3632193 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 25 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG