New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	390805 =	48 (0.260)	36 (0.200)	23/150	12.8	0.39	intergenic (‑121/+168)	mipZ/rpmE	chromosome partitioning protein MipZ/50S ribosomal protein L31
	?	NC_014034	1732895 =	65 (0.270)					intergenic (‑319/‑84)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

TTGCGCGGCGCCACCCGACCGCCAGAGGGGGCTCCGCCCCCCTTTTCCTTGGCAAAATACGCTGGGGGGGTGCGGGGGGCGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAA...................................................................................................  <  NC_014034/390925‑390805 ................................................................................................CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAGGAGCGCCCGATGACCCAGTTCAGC  >  NC_014034/1732895‑1732993                                                                                                                                                                                                                                                                                               GGGGGGGGGGGGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTT                                                        <  2:3314660/101‑1 (MQ=255)                                                                  GGGGGGGCGGGGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTT                                                        <  2:696480/101‑1 (MQ=12)                                                                   GGGGGGGGGGGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTC                                                       <  2:384356/101‑1 (MQ=255)                                                                    GGGGGCGGGGGGTGAACCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCG                                                      <  1:1676318/101‑1 (MQ=255)                                                                        ggGGGGGGAGACCCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCC                                                  <  1:1903476/99‑1 (MQ=255)                                                                        GCGGGGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCC                                                  <  1:4199792/101‑1 (MQ=17)                                                                          GGGGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGGGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCCGCCCGG                                                >  1:1217163/1‑101 (MQ=255)                                                                           GGGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGC                                               >  1:1100806/1‑101 (MQ=17)                                                                            ggggagaccCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCG                                              <  2:4305920/92‑1 (MQ=0)                                                                            GGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCG                                              >  1:3700714/1‑101 (MQ=17)                                                                             GGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGC                                             >  2:2928106/1‑101 (MQ=17)                                                                             GGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCCGCGC                                             >  1:3128182/1‑101 (MQ=12)                                                                              gttgacGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCT                                            <  2:779340/95‑1 (MQ=0)                                                                              ggtgcAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCT                                            <  1:3266490/96‑1 (MQ=14)                                                                                 gagtCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCT                                         <  2:338234/97‑1 (MQ=1)                                                                                 GAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCT                                         >  2:2502121/1‑101 (MQ=31)                                                                                 GAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCT                                         >  2:2478147/1‑101 (MQ=31)                                                                                   ccCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAA                                       <  2:3969236/99‑1 (MQ=1)                                                                                   ccCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAA                                       <  2:2131660/99‑1 (MQ=1)                                                                                   AGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAA                                       >  2:2349969/1‑101 (MQ=1)                                                                                     CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAAC                                     <  2:850330/101‑1 (MQ=1)                                                                                     CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAAC                                     <  2:2055739/101‑1 (MQ=1)                                                                                     CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAAC                                     <  1:1253929/101‑1 (MQ=1)                                                                                     CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCCTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCCTTCGGCCCGGCGCTGCTCAAC                                     >  2:1859219/1‑101 (MQ=0)                                                                                          CGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCG                                >  1:30969/1‑101 (MQ=1)                                                                                           GCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGC                               >  1:3007731/1‑101 (MQ=1)                                                                                            CGGGTCGCCTCAGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCC                              <  1:4864337/101‑1 (MQ=1)                                                                                             GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCA                             <  2:3186628/101‑1 (MQ=1)                                                                                             GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCA                             >  1:3827121/1‑101 (MQ=1)                                                                                             GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCA                             <  1:3280553/101‑1 (MQ=1)                                                                                             GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCA                             >  1:2281270/1‑101 (MQ=1)                                                                                             GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACCCGCGCCA                             >  2:2274152/1‑101 (MQ=1)                                                                                              GGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAA                            <  1:4004572/101‑1 (MQ=1)                                                                                               GTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAA                           >  2:1468923/1‑101 (MQ=1)                                                                                               GTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAA                           <  1:1825146/101‑1 (MQ=1)                                                                                                TCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAG                          >  2:2804728/1‑101 (MQ=1)                                                                                                                                                                                                                              TTGCGCGGCGCCACCCGACCGCCAGAGGGGGCTCCGCCCCCCTTTTCCTTGGCAAAATACGCTGGGGGGGTGCGGGGGGCGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAA...................................................................................................  <  NC_014034/390925‑390805 ................................................................................................CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAGGAGCGCCCGATGACCCAGTTCAGC  >  NC_014034/1732895‑1732993 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG