New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 456144221 (0.920)42 (0.170) 6/196 25.7 0.24 intergenic (+99/+7) RCAP_rcc00426/panC hypothetical protein/pantoate‑‑beta‑alanine ligase
?NC_014034 = 2330173 46 (0.190)intergenic (+148/+164) RCAP_rcc02161/mrcA hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

TGATCCCGGCCGCACCCGCGCGAGGGGCGTATTTTTGCCAAGAAGAAACGATGCGGTTTTTCCTGGTCCAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCG.....................................................................................................  >  NC_014034/456043‑456144
....................................................................................................CG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGA  <  NC_014034/2330173‑2330074
                                                                                                                                                                                                           
                                                                    CAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                   >  2:725545/1‑101 (MQ=1)
                                                                    CAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                   >  2:3496154/1‑101 (MQ=1)
                                                                    CAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                   >  1:2995122/1‑101 (MQ=1)
                                                                     AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                  >  1:81999/1‑101 (MQ=1)
                                                                     AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                  >  2:4919730/1‑101 (MQ=1)
                                                                     AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                  >  1:631406/1‑101 (MQ=1)
                                                                     AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                  >  2:4447053/1‑101 (MQ=1)
                                                                      AATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCG                                 >  1:669691/1‑101 (MQ=1)
                                                                        TACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                               >  2:4125038/1‑101 (MQ=1)
                                                                        TACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                               >  1:1451432/1‑101 (MQ=1)
                                                                        TACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                               >  2:90493/1‑101 (MQ=1)
                                                                           GCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTT                            >  1:4072035/1‑101 (MQ=1)
                                                                             CGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGC                          >  2:1830716/1‑101 (MQ=1)
                                                                              GGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCC                         >  2:4462890/1‑101 (MQ=1)
                                                                              GGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCC                         >  2:2863140/1‑101 (MQ=1)
                                                                               GGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCG                        >  1:4251385/1‑101 (MQ=1)
                                                                               GGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCG                        >  1:4154730/1‑101 (MQ=1)
                                                                                    ggGGGGGCGGCCCCCCCC.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                   <  2:3886890/99‑1 (MQ=0)
                                                                                    gCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                   <  2:4562056/100‑1 (MQ=1)
                                                                                    gCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                   <  2:3131150/100‑1 (MQ=1)
                                                                                    gCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                   <  2:1953783/100‑1 (MQ=1)
                                                                                     gGGGGGGGGCCCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTG                  <  2:2877786/100‑1 (MQ=0)
                                                                                      GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGGGCTCTGCGCGCCGTTGCCGCCCTTGG                 >  2:741082/1‑101 (MQ=1)
                                                                                      GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                 >  2:2559844/1‑101 (MQ=1)
                                                                                      GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                 >  2:1686544/1‑101 (MQ=1)
                                                                                      GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                 >  1:905673/1‑101 (MQ=1)
                                                                                      GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                 >  2:4748093/1‑101 (MQ=1)
                                                                                         cgcccccCCCCCC.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGG              <  2:4254407/94‑1 (MQ=0)
                                                                                           gggccCCCCCC.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAG            <  1:4793234/96‑1 (MQ=0)
                                                                                            ggaGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG           >  2:3711830/4‑101 (MQ=1)
                                                                                            ggaGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG           >  1:1201483/4‑101 (MQ=1)
                                                                                            ggaGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG           >  2:572004/4‑101 (MQ=1)
                                                                                            ggaGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG           >  1:4081553/4‑101 (MQ=1)
                                                                                            ggaGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGACCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG           >  1:771653/4‑101 (MQ=1)
                                                                                               cCCCCCGCCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCC         <  2:1833358/100‑1 (MQ=0)
                                                                                               cCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA        <  1:1180639/100‑1 (MQ=1)
                                                                                               GCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA        >  1:21854/1‑101 (MQ=1)
                                                                                               GCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA        <  1:564971/101‑1 (MQ=1)
                                                                                                CCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAA       <  1:4153193/101‑1 (MQ=1)
                                                                                                CCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAA       <  2:4047545/101‑1 (MQ=1)
                                                                                                 CCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAG      <  1:4684641/101‑1 (MQ=1)
                                                                                                  CCCC.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC     <  2:4251068/101‑1 (MQ=1)
                                                                                                                                                                                                           
TGATCCCGGCCGCACCCGCGCGAGGGGCGTATTTTTGCCAAGAAGAAACGATGCGGTTTTTCCTGGTCCAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCG.....................................................................................................  >  NC_014034/456043‑456144
....................................................................................................CG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGA  <  NC_014034/2330173‑2330074

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG