New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 456144	221 (0.920)	42 (0.170)	6/196	25.7	0.24	intergenic (+99/+7)	RCAP_rcc00426/panC	hypothetical protein/pantoate‑‑beta‑alanine ligase
	?	NC_014034	= 2330173	46 (0.190)					intergenic (+148/+164)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

TTCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......CGG.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCG  >  NC_014034/2330073‑2330245                                                                                                     |                                                                                           ttCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGAGCCcgg                                                                                            >  1:1949353/1‑101 (MQ=255) ttCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCggg                                                                                            <  2:4418048/101‑1 (MQ=255) ttCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCggg                                                                                            >  1:3496424/1‑101 (MQ=255)  tCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGgc                                                                                           <  2:4454501/101‑1 (MQ=255)    ggCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGGCCCcggggg                                                                                         >  1:1126590/1‑98 (MQ=255)     gCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCggggggg                                                                                        >  2:4251068/1‑97 (MQ=255)      cTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Ggg                                                                            >  1:4684641/1‑101 (MQ=255)       ttGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gggg                                                                           >  2:4047545/1‑100 (MQ=255)       ttGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gggg                                                                           >  1:4153193/1‑100 (MQ=255)        tGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Ggggg                                                                          >  1:1180639/1‑99 (MQ=255)        tGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Ggggc                                                                          >  1:564971/1‑99 (MQ=255)        tGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Ggggc                                                                          <  1:21854/101‑3 (MQ=255)         ggCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCggggcgggggg                                                                                    >  2:1833358/1‑93 (MQ=255)           ccTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGGTCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Ggggctcc                                                                       <  1:771653/101‑6 (MQ=255)           ccTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Ggggctcc                                                                       <  2:572004/101‑6 (MQ=255)           ccTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Ggggctcc                                                                       <  1:1201483/101‑6 (MQ=255)           ccTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Ggggctcc                                                                       <  2:3711830/101‑6 (MQ=255)           ccTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Ggggctcc                                                                       <  1:4081553/101‑6 (MQ=255)              ccGCCAAGGGGGCCAACGGCGCGCAGAGCGCCGCGCGGATCGGCCGATGGCGGAGAGGAATTTCGCCTCGCAGGCGCGGCGACCGGGGC....G.......Ggggctccgcc                                                                    <  2:4550536/101‑9 (MQ=37)                                      agagCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTgcgc                                            <  1:480302/101‑1 (MQ=18)                                        agCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCa                                          <  1:4254724/101‑1 (MQ=18)                                        agCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCa                                          <  1:3967207/101‑1 (MQ=18)                                        agCGCCGCACGGATCGGCCGATGGCAGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCa                                          <  1:2130277/101‑1 (MQ=18)                                            ccgcACGGATCGGCGGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaa                                      <  2:3321482/101‑1 (MQ=17)                                            ccgcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaa                                      <  2:1105057/101‑1 (MQ=18)                                            ccgcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaa                                      <  1:3040680/101‑1 (MQ=18)                                             cgcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGGTCCGC.......CCCCGCACCCCCCGCGTATTTTCGCCCAGaaa                                     >  2:801357/1‑101 (MQ=16)                                             cgcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCTCCCCCGGCGTATTTGCGCCAAGaaa                                     <  2:4917797/101‑1 (MQ=18)                                             cgcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaaa                                     <  1:4583735/101‑1 (MQ=18)                                              gcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaaaa                                    <  2:2489664/101‑1 (MQ=18)                                              gcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaaaa                                    <  2:4323755/101‑1 (MQ=18)                                              gcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaaaa                                    <  2:1962021/101‑1 (MQ=18)                                               cACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaaaaa                                   <  1:4154572/101‑1 (MQ=17)                                               cACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCCCCCCCCCGGCGTATTTTCGCCAAGaaaaa                                   >  2:4553042/1‑101 (MQ=16)                                                     tccgCCGAAGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCTCCCCCGGCGTATTTGCGCCAAGAAAAAGCCggg                             <  1:3197574/98‑1 (MQ=12)                                                     tCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCggg                             >  1:1885418/1‑101 (MQ=17)                                                     tCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCggg                             <  1:2464376/101‑1 (MQ=18)                                                      cGGCCGATGGCGGAGAGAAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCgggg                            <  2:4653288/101‑1 (MQ=17)                                                        gCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCTGGGGCTC....CGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGgcg                          >  1:1365836/1‑101 (MQ=17)                                                        gCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCgggggg                          >  2:780250/1‑99 (MQ=17)                                                        gCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGgcg                          <  2:3213737/101‑1 (MQ=17)                                                        gCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTAATTGCGCCCAGAAAAAACCGGGgcg                          >  1:4682897/1‑101 (MQ=9)                                                         ccGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGgcgc                         <  2:805713/101‑1 (MQ=17)                                                         ccGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGGATTTTCGCCCAGAAAAAGCCGGGgcgc                         >  1:3129840/1‑101 (MQ=12)                                                          cGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGgcgcg                        <  2:3404209/101‑1 (MQ=17)                                                          cGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......GGGGCTCCCCCCCCGCACCCCCCGCGGATTTGCGCCCAGAAAAAGACCGGgcgcg                        >  2:1677858/1‑101 (MQ=12)                                                           gATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGgcgcgc                       <  2:4327611/101‑1 (MQ=17)                                                            aTGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGG....GGGGGCTCCGC.......CCCCCCCCCCCCCGCGTCTTTGCGCCCAGAAAAAACCGGGGCGGGCa                      >  2:345062/1‑101 (MQ=9)                                                             tGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCAt                     <  1:1143659/101‑1 (MQ=17)                                                              ggCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATg                    <  2:3023837/101‑1 (MQ=17)                                                               gCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGc                   <  1:3887182/101‑1 (MQ=18)                                                                  gagaGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCggg                <  1:1482087/101‑1 (MQ=18)                                                                   agagGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCgggg               <  2:2058113/101‑1 (MQ=18)                                                                   agagGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCgggg               <  2:3095750/101‑1 (MQ=18)                                                                    gagGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGc              >  1:4025121/1‑101 (MQ=17)                                                                     agGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGcc             <  2:4964389/101‑1 (MQ=17)                                                                         aTTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCgg         <  1:25900/101‑1 (MQ=17)                                                                          tttCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGa        <  1:3365170/101‑1 (MQ=17)                                                                           ttCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGAt       <  2:4501526/101‑1 (MQ=17)                                                                              gccgcGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCAc    <  2:3783694/101‑1 (MQ=18)                                                                              gccgcGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCAc    <  1:801459/101‑1 (MQ=18)                                                                               ccgcGCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCAcc   <  1:1504161/101‑1 (MQ=18)                                                                                cgcgCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACcg  <  1:3569662/101‑1 (MQ=18)                                                                                cgcgCAGGCGCGGCGACCCGGGC....GGGGGCTCCGC.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACcg  <  1:2044245/101‑1 (MQ=18)                                                                                                     |                                                                                           TTCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......CGG.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCG  >  NC_014034/2330073‑2330245 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG