New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744683	106 (0.500)	58 (0.270)	29/174	12.6	0.44	intergenic (+68/+144)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 2330277	42 (0.170)					intergenic (+252/+60)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

TCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGAT...................................................................................................  >  NC_014034/744572‑744683 ...................................................................................................GGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGG  <  NC_014034/2330277‑2330179                                                                                                                                                                                                                                                                                  ggcgatGCCTC.GGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGC                                                  >  2:4189205/7‑101 (MQ=25)                                                                  atGCCTC.GGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGGGATCCGGGGCCCCGCATGC                                              >  2:2842084/3‑101 (MQ=12)                                                                   tccccgGGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGC                                              <  2:4490551/95‑1 (MQ=18)                                                                   ggcccgcGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGC                                              <  1:1916078/94‑1 (MQ=0)                                                                    GCCTC.GGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGC                                            >  1:4047848/1‑101 (MQ=11)                                                                     ccccccgcccCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGC                                            <  2:1348190/91‑1 (MQ=0)                                                                       ccggccccCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGC                                          <  2:284622/93‑1 (MQ=0)                                                                         cGGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCC                                        <  1:3734938/100‑1 (MQ=11)                                                                          gccccCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCC                                       <  2:226544/96‑1 (MQ=1)                                                                          gccccCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCC                                       <  1:1939194/96‑1 (MQ=1)                                                                          gccccCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCCCCGGTGATCCGGGGCCCCGCATGCGCGCCCC                                       <  1:4475354/96‑1 (MQ=0)                                                                          GGCGCCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGCTCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCC                                       <  1:3519875/101‑1 (MQ=0)                                                                             GACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGC                                    >  2:3977837/1‑101 (MQ=1)                                                                             GACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGC                                    >  2:4527515/1‑101 (MQ=1)                                                                               CCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTT                                  <  1:4649269/101‑1 (MQ=1)                                                                               CCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTT                                  <  2:3487107/101‑1 (MQ=1)                                                                                 CGCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTT                                <  2:4991273/101‑1 (MQ=1)                                                                                  GCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTT                               <  2:4462702/101‑1 (MQ=1)                                                                                  GCCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGGGATCCGGGGCCCCGCATGCGCCCCCCGGCCTTTT                               >  1:1187827/1‑101 (MQ=0)                                                                                   CCGGGGGCTCCGCCCCCGGCCCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTC                              <  2:1926417/101‑1 (MQ=1)                                                                                    CGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCT                             >  1:3618665/1‑101 (MQ=1)                                                                                    CGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCT                             >  2:3029687/1‑101 (MQ=1)                                                                                    CGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCT                             >  2:4839135/1‑101 (MQ=1)                                                                                     GGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTT                            >  1:4873656/1‑101 (MQ=1)                                                                                     GGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTT                            <  1:1325208/101‑1 (MQ=1)                                                                                      GGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTG                           <  2:3532475/101‑1 (MQ=1)                                                                                      GGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTG                           <  1:2161401/101‑1 (MQ=1)                                                                                      GGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTG                           <  1:5008006/101‑1 (MQ=1)                                                                                       GGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGG                          >  2:1804799/1‑101 (MQ=1)                                                                                       GGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGG                          >  2:1180522/1‑101 (MQ=1)                                                                                       GGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGG                          <  2:3844619/101‑1 (MQ=1)                                                                                       GGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGACCCGCATGCGCGCCCCGGCTTTTTCTTGG                          >  2:2713917/1‑101 (MQ=1)                                                                                        GGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGC                         <  2:4969887/101‑1 (MQ=1)                                                                                         GCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCG                        <  1:4920644/101‑1 (MQ=1)                                                                                         GCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCG                        >  1:355764/1‑101 (MQ=1)                                                                                          CTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGC                       <  1:979781/101‑1 (MQ=1)                                                                                           TCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCA                      <  1:617605/101‑1 (MQ=1)                                                                                            CCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAA                     >  1:1953920/1‑101 (MQ=1)                                                                                            CCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAA                     >  1:3131388/1‑101 (MQ=1)                                                                                            CCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCACCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAA                     >  2:1885281/1‑101 (MQ=1)                                                                                             CGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAA                    <  1:2833928/101‑1 (MQ=1)                                                                                              GCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAAT                   <  1:398041/101‑1 (MQ=1)                                                                                              GCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAAT                   <  1:3796001/101‑1 (MQ=1)                                                                                              GCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAAT                   <  1:3216029/101‑1 (MQ=1)                                                                                               CCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAACCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATA                  <  2:4806721/101‑1 (MQ=1)                                                                                               CCCCCGGACCCCCGGGATCTTGGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATA                  >  1:2877999/1‑101 (MQ=1)                                                                                                CCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAATCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATAC                 <  1:420121/101‑1 (MQ=1)                                                                                                CCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATAC                 <  2:1617953/101‑1 (MQ=1)                                                                                                CCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATAC                 >  2:1355668/1‑101 (MQ=1)                                                                                                CCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATAC                 <  1:3558229/101‑1 (MQ=1)                                                                                                CCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATAC                 <  1:1083392/101‑1 (MQ=1)                                                                                                 CCCGGGCCCCCGGGCTCTTTGGCCCCAGGTGAAAGCCGCCCGGTCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACG                <  1:1243605/101‑1 (MQ=0)                                                                                                 CCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACG                <  1:2095716/101‑1 (MQ=1)                                                                                                  CCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCGGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGC               <  2:3883660/101‑1 (MQ=1)                                                                                                  CCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGC               <  2:680686/101‑1 (MQ=1)                                                                                                   CGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCC              <  2:4465280/101‑1 (MQ=1)                                                                                                   CGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCC              >  1:494801/1‑101 (MQ=1)                                                                                                   CGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCC              >  1:3463993/1‑101 (MQ=1)                                                                                                                                                                                                                     TCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGAT...................................................................................................  >  NC_014034/744572‑744683 ...................................................................................................GGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGG  <  NC_014034/2330277‑2330179 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG