New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	900803 =	55 (0.230)	44 (0.190)	13/194	21.0	0.45	intergenic (‑132/‑155)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
	?	NC_014034	= 2995638	52 (0.210)					intergenic (+178/+42)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

CTTGGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGG....................................................................................................  <  NC_014034/900905‑900803 ....................................................................................................GGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTGG  <  NC_014034/2995638‑2995539                                                                                                                                                                                                                   GCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCc                                                                                                  >  2:4722063/1‑100 (MQ=1)        CCGCCTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTC                                                                                                 <  2:2228709/101‑1 (MQ=1)        CCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTC                                                                                                 <  2:4920256/101‑1 (MQ=1)        CCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTC                                                                                                 <  1:718660/101‑1 (MQ=1)         CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACTCGCGGGGGCTCC                                                                                                <  1:2740626/101‑1 (MQ=1)         CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCC                                                                                                <  2:133447/101‑1 (MQ=1)         CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCC                                                                                                <  2:1203393/101‑1 (MQ=1)         CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCC                                                                                                >  2:2774408/1‑101 (MQ=1)         CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCC                                                                                                <  2:3794452/101‑1 (MQ=1)          GACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCc                                                                                               >  2:3075725/1‑100 (MQ=1)          GACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG                                                                                               <  2:4572976/101‑1 (MQ=1)           ACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGGTCCcc                                                                                              >  1:1230489/1‑99 (MQ=1)           ACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGGTCCGC                                                                                              >  2:2121871/1‑101 (MQ=1)           ACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCCGGGGGCCCGC                                                                                              >  1:1179696/1‑101 (MQ=2)            CTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGggccccc                                                                                             >  2:1917165/1‑94 (MQ=14)            CTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCCCCGCC                                                                                             >  2:1570094/1‑101 (MQ=1)             TCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCC                                                                                            >  1:805871/1‑101 (MQ=1)             TCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCCCGGGGGggcccccc                                                                                            >  2:1343227/1‑93 (MQ=9)              CTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGgggggcccc                                                                                           >  2:1490459/1‑92 (MQ=2)              CTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCC                                                                                           <  2:4359155/101‑1 (MQ=1)               TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCC                                                                                          <  1:4138075/101‑1 (MQ=1)               TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCC                                                                                          <  2:1319837/101‑1 (MQ=1)               TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCC                                                                                          <  1:2052118/101‑1 (MQ=1)               TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCC                                                                                          <  1:1273078/101‑1 (MQ=1)                AGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCg                                                                                         <  1:1163885/101‑2 (MQ=11)                 GCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCgc                                                                                        <  2:2886669/101‑3 (MQ=31)                 GCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCCc                                                                                        >  1:3433030/1‑100 (MQ=11)                     AAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCC.CACCC                                                                                   >  2:3329660/1‑101 (MQ=14)                     AAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCC                                                                                   <  2:780808/101‑1 (MQ=34)                         TGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCgg                                                                               <  2:3287116/101‑3 (MQ=37)                         TGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCgg                                                                               <  2:202147/101‑3 (MQ=37)                           CCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGC                                                                             <  1:1245744/101‑1 (MQ=25)                             CCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGT                                                                           <  2:3188678/101‑1 (MQ=18)                                TCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCCCCCCCGGGCGTATT                                                                        <  2:4980466/101‑1 (MQ=9)                                TCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATT                                                                        <  2:1154767/101‑1 (MQ=9)                                TCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATT                                                                        <  2:4034009/101‑1 (MQ=9)                                TCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATT                                                                        <  2:2718226/101‑1 (MQ=9)                                TCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATT                                                                        <  2:4764751/101‑1 (MQ=9)                                  TGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATTTg                                                                      <  2:603868/101‑2 (MQ=9)                                   GACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATTTgc                                                                     <  2:1048734/101‑3 (MQ=9)                                   GACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATTTgc                                                                     <  2:1484401/101‑3 (MQ=9)                                    ACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCCG.ACCCCCGGGCGTATTTgca                                                                    >  2:679202/1‑98 (MQ=255)                                    ACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATTTgca                                                                    <  1:4272611/101‑4 (MQ=9)                                    ACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATTTgca                                                                    <  1:2585050/101‑4 (MQ=9)                                                                                                                                                                                                             CTTGGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGG....................................................................................................  <  NC_014034/900905‑900803 ....................................................................................................GGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTGG  <  NC_014034/2995638‑2995539 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG