New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	900803 =	55 (0.230)	44 (0.190)	13/194	21.0	0.45	intergenic (‑132/‑155)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
	?	NC_014034	= 2995638	52 (0.210)					intergenic (+178/+42)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

GCCAAGGAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCG  >  NC_014034/2995538‑2995737                                                                                                      |                                                                                                       gCCGAGGAAACCCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAGTACG.CCGGGGGGTGCGGGGGGCGGAGcc                                                                                                        <  2:2165196/101‑1 (MQ=255) gCCAAGGAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGcc                                                                                                        >  1:1972286/1‑101 (MQ=255)  ccAAGGAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGccc                                                                                                       <  2:4955311/101‑1 (MQ=255)   cAAGGAAACCCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGcccc                                                                                                      <  2:2852373/101‑1 (MQ=255)     aGGAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGcccccc                                                                                                    <  2:4171502/101‑1 (MQ=255)     aGGAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGGGCGGGGGGCGGAGcccccc                                                                                                    >  1:2179185/1‑101 (MQ=255)      ggaaccccccTTCGTTCGCCCCCCCCCACCCGGCCGGCGCCCCGCCCCCTTGCTTTCCCTTGGAAAAAACCG.CCGGGGGGTGCGGGGGGCGGAGCCCCCcg                                                                                                   <  2:4396749/95‑1 (MQ=2)      ggAAACCCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCcg                                                                                                   <  2:3747044/101‑1 (MQ=255)      ggAAACCCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCcg                                                                                                   <  2:3696688/101‑1 (MQ=255)      ggAAACCCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCcg                                                                                                   <  2:4748342/101‑1 (MQ=255)       gAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCcg.c                                                                                                 >  1:938565/1‑101 (MQ=255)       gAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGGGCGGGGGGCGGAGCCCCCcg.c                                                                                                 >  2:2321053/1‑101 (MQ=255)          aaCCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.Cggg                                                                                              >  1:438149/1‑101 (MQ=255)            ccccTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTc                                                                                            >  2:512201/1‑101 (MQ=255)                   ggTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCgg                                                                                     >  2:3596453/1‑101 (MQ=255)                      ctcccccccGCCCCCCGCGGGCGGCCCGGCGCCCTACTTTTCGTTGGCAAAAGACG.CGGGGGGGTGGGGGGGGCGGGGCCCCCCG.CGGGTCGCCCCGGCtt                                                                                  <  2:1492511/96‑1 (MQ=12)                       gccgccCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..g                                                                               >  1:3012808/1‑101 (MQ=255)                          gccCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCg                                                                            >  1:4281372/1‑101 (MQ=255)                             ccGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCgggg                                                                         >  2:1925378/1‑101 (MQ=255)                                      gTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATccc                                                                >  2:1136024/1‑101 (MQ=255)                                         ggcggcCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GGCGGGGCGAAATcccccc                                                             >  1:4562026/1‑100 (MQ=255)                                                 aGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGGAATCCCCCGCTCAGTcc                                                     >  2:4812889/1‑101 (MQ=255)                                                      tttgtttttCCTTGGAAAAATACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCcctt                                                   >  1:4542661/6‑99 (MQ=0)                                                            tttCCTTGGAAAAATACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttcatctt                                             >  1:3168513/1‑93 (MQ=0)                                                            tttCCTGAGAAAAGTCCG.CGGGGGGGGGGGGGGGGCGGGCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTc                                          <  2:418764/101‑1 (MQ=25)                                                               ccTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGAc                                       >  1:3733821/1‑101 (MQ=255)                                                                cTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGAcc                                      >  2:3085955/1‑101 (MQ=255)                                                                  tGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGGCCCAGAGACTTTCGACCTc                                    >  2:2955337/1‑101 (MQ=255)                                                                   ggCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGCCTTTCGACCTCg                                   >  2:2335625/1‑101 (MQ=255)                                                                    gCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGa                                  >  2:155669/1‑101 (MQ=255)                                                                       aaaatgggggggggggGGGGGGGGGGGGCCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAAc                                <  1:1704361/91‑1 (MQ=37)                                                                            cG.CGGGGGGGTGGGGGGGGGGGCCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTc                          <  2:2882329/101‑1 (MQ=38)                                                                            cG.CCGGGGGGTGGGGGGGGCGGCGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTc                          <  2:5048236/101‑1 (MQ=255)                                                                             ggcgggggggCGGGGGGGGCGCGCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTc                          <  2:1273000/97‑1 (MQ=38)                                                                             g.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGCACCGGGTCa                         >  1:4945823/1‑101 (MQ=255)                                                                                cGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGCAATCCCCCGCTCAGCCCCCGAGGCTTTCGGCCTCGAACCGGGTCatc                       >  2:4415283/1‑99 (MQ=37)                                                                                 ggggggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAc                      >  1:4751490/1‑101 (MQ=255)                                                                                 ggggggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAc                      >  2:3887071/1‑101 (MQ=255)                                                                                  gggggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..TCCGGGGCGAAATCCCCCCCTCATTGCCAGAGACCTTCGGCCTCGGACCGGGGGAGAcc                     >  1:1571164/1‑100 (MQ=21)                                                                                  gggggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGAcg                     >  2:1102215/1‑101 (MQ=255)                                                                                   ggggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAcgc                    >  1:1518776/1‑101 (MQ=255)                                                                                     ggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCgg                  >  2:2036991/1‑101 (MQ=255)                                                                                        gCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATg               >  1:290871/1‑101 (MQ=255)                                                                                        gCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATg               >  1:4392879/1‑101 (MQ=255)                                                                                         gggggggGGGGCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgc              <  1:3837172/100‑1 (MQ=255)                                                                                         cGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgc              >  2:1142012/1‑101 (MQ=255)                                                                                          ggggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcg             >  1:205053/1‑101 (MQ=255)                                                                                            ggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGACGCGGATGCGCa           >  1:911110/1‑101 (MQ=255)                                                                                             gggCGGCCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGAGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAg          <  1:1051873/101‑1 (MQ=255)                                                                                              ggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAgg         >  1:2671468/1‑101 (MQ=255)                                                                                              ggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAgg         >  1:2482425/1‑101 (MQ=255)                                                                                                 ggAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCgg      >  2:4049054/1‑101 (MQ=255)                                                                                                   aGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGc    >  1:4627497/1‑101 (MQ=255)                                                                                                   aGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGc    >  1:4248138/1‑101 (MQ=255)                                                                                                     ccccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCg  >  2:610852/1‑101 (MQ=255)                                                                                                     ccccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCACGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCg  <  2:1571034/101‑1 (MQ=255)                                                                                                      |                                                                                                       GCCAAGGAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCG  >  NC_014034/2995538‑2995737 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 39 ≤  ATCG