New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1608051 =	0 (0.000)	78 (0.350)	29/184	13.4	1.00	intergenic (+321/‑26)	RCAP_rcc01484/murD	hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
	?	NC_014034	= 3053277	NA (NA)					intergenic (+133/‑102)	acsA3/RCAP_rcc02860	acetate‑‑CoA ligase/hypothetical protein
Rejected: Position hash score below cutoff.

CCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCTTGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGGCCGCGCGGCGCGGGCCCAATTCACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCG  >  NC_014034/1607948‑1608151                                                                                                        |                                                                                                     ccTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCa                                                                                                      >  1:1232146/1‑101 (MQ=38) ccTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCa                                                                                                      <  2:4553907/101‑1 (MQ=38)  cTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAc                                                                                                     >  2:1553387/1‑101 (MQ=38)    tttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccc                                                                                                   >  1:1290441/1‑101 (MQ=38)     ttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGGGGCGCGCCCCCCCCCTTGGCC.CCCGGGGGGGGCCCAA.TCAcccc                                                                                                  >  1:2526482/1‑101 (MQ=255)      tCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccccc                                                                                                 >  1:3335134/1‑101 (MQ=38)       cccAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCg                                                                                                <  2:806287/101‑1 (MQ=38)       cccAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCg                                                                                                <  2:2117569/101‑1 (MQ=38)       cccAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCg                                                                                                <  1:3039654/101‑1 (MQ=38)        ccAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGc                                                                                               <  1:4040559/101‑1 (MQ=38)          aGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgg                                                                                             <  2:517608/101‑3 (MQ=37)           gCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcggg                                                                                            <  2:1999141/101‑4 (MQ=37)           gCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcggg                                                                                            <  1:1355739/101‑4 (MQ=37)             ggATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCGCTCTTGGTCCGC.TGGCGC.GGCCCAATTCCACCCCGccggag                                                                                          >  2:4045692/1‑96 (MQ=255)             ggATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGTCCAATTCACCCCCGcgggat                                                                                          >  1:1501332/1‑96 (MQ=37)             ggATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggat                                                                                          <  2:2441146/101‑6 (MQ=37)              gctCCCGCGGCGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggata                                                                                         <  1:3089768/99‑7 (MQ=25)              gagcccGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggata                                                                                         <  2:3630896/98‑7 (MQ=25)              gATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggata                                                                                         <  2:2808651/101‑7 (MQ=37)              gATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggata                                                                                         >  1:2042818/1‑95 (MQ=37)               aTCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatat                                                                                        <  2:4481778/101‑8 (MQ=37)               aTCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatat                                                                                        >  2:3082980/1‑94 (MQ=37)               aTCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatat                                                                                        <  2:1270307/101‑8 (MQ=37)                tCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggctatt                                                                                       >  1:4883317/1‑93 (MQ=37)                  ccGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatatttc                                                                                     <  1:232019/101‑11 (MQ=25)                                                                                               gggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTg           >  2:3464337/10‑101 (MQ=255)                                                                                               gggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTg           >  2:4952171/10‑101 (MQ=255)                                                                                                 gtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGc         >  1:367216/8‑101 (MQ=255)                                                                                                  tgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGGGCTCGGGTCTGGcc        >  1:1054509/7‑101 (MQ=255)                                                                                                  tgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGcc        <  2:367163/95‑1 (MQ=255)                                                                                                   gtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATTTGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCa       >  2:1904457/6‑101 (MQ=255)                                                                                                   gtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCa       >  1:2998735/6‑101 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGGGCTCGGGTCTGGCCAc      >  2:2076785/5‑101 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAc      <  1:1579751/97‑1 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAc      <  2:4665313/97‑1 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAc      <  2:1501202/97‑1 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAc      >  1:4143501/5‑101 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGGCTGGcccc      >  2:4537826/5‑99 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTAGCGGTGCTGGCGCTCGGGCGCTCGGGTCTGGCCAc      >  2:2850056/5‑101 (MQ=255)                                                                                                    ggaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAc      <  2:1335094/97‑1 (MQ=255)                                                                                                     gaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcg     >  2:4450889/4‑101 (MQ=255)                                                                                                     gaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcg     >  1:2856562/4‑101 (MQ=255)                                                                                                     gaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcg     <  2:2526301/98‑1 (MQ=255)                                                                                                      aaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcgg    <  2:1646208/99‑1 (MQ=255)                                                                                                      aaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcgg    >  1:2219632/3‑101 (MQ=255)                                                                                                       aaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcggc   >  1:3578087/2‑101 (MQ=255)                                                                                                       aaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcggc   <  2:4609697/100‑1 (MQ=255)                                                                                                       aaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGGCTGGCCAcggc   >  1:3309815/2‑101 (MQ=255)                                                                                                        aCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcggcg  >  1:3770336/1‑101 (MQ=255)                                                                                                        aCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcggcg  >  2:2158800/1‑101 (MQ=255)                                                                                                        aCCCCCGCAGCTGACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcggcg  >  1:2728036/1‑101 (MQ=255)                                                                                                        |                                                                                                     CCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCTTGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGGCCGCGCGGCGCGGGCCCAATTCACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCG  >  NC_014034/1607948‑1608151 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG