New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2880583 =	14 (0.070)	66 (0.310)	23/174	14.8	0.50	coding (1002/1053 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
	?	NC_014034	= 3276393	118 (0.480)					intergenic (‑145/+104)	RCAP_rcc03082/RCAP_rcc03083	lipoprotein/membrane bound YbgT‑like protein
Rejected: Position hash score below cutoff.

CAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........C..CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATGATCGGGCG  >  NC_014034/2880484‑2880683                                                                                                                         |                                                                                                     cAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........g..cg                                                                                                     >  2:834944/1‑101 (MQ=255)  aaGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GG.........c..cgt                                                                                                    >  1:1830145/1‑100 (MQ=255)  aaGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........g..cgt                                                                                                    >  1:4598412/1‑100 (MQ=255)  aaGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........g..cgt                                                                                                    >  1:3203415/1‑100 (MQ=255)  aaGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........g..cgt                                                                                                    >  2:3162036/1‑100 (MQ=255)   aGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........g..cgtc                                                                                                   >  2:3820948/1‑99 (MQ=255)   aGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........g..cggc                                                                                                   >  1:188331/1‑99 (MQ=255)      gcggcAGCCCGTCAATCGCACCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATACCCCGGGGGTCCGGGGGCAGAGCCCCGGGCG..........GC.........g..cgtcaca                                                                                                <  2:3169527/101‑6 (MQ=25)        ggcAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........g..cgtcacagc                                                                                              >  2:3253654/1‑94 (MQ=255)         gcAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........g..cgtcacagcc                                                                                             >  2:422996/1‑93 (MQ=255)         ccAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........g..cgtcacagcc                                                                                             <  2:2748722/100‑9 (MQ=25)                                               tttCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCcgcg                                                                  >  1:767228/1‑101 (MQ=2)                                               tttCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCcgcg                                                                  >  1:445722/1‑101 (MQ=2)                                                ttCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGa                                                                 >  1:4653693/1‑101 (MQ=9)                                                ttCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGa                                                                 >  2:706911/1‑101 (MQ=9)                                                 tCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGAt                                                                >  2:2608944/1‑101 (MQ=9)                                                  cATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATc                                                               >  2:2880881/1‑101 (MQ=9)                                                   aTCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCa                                                              >  1:2415107/1‑101 (MQ=9)                                                     cTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGa                                                            >  1:1316668/1‑101 (MQ=9)                                                     cTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGa                                                            >  1:2202890/1‑101 (MQ=9)                                                        gCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACtg                                                         >  1:454003/1‑101 (MQ=12)                                                         cTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACtgt                                                        >  2:1226658/1‑101 (MQ=12)                                                         cTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACtgt                                                        >  1:2895720/1‑101 (MQ=12)                                                          ttCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACtgtg                                                       >  2:418576/1‑101 (MQ=12)                                                          ttCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACtgtg                                                       >  1:3252792/1‑101 (MQ=12)                                                           tCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGAcggaaa                                                      >  1:55676/1‑96 (MQ=9)                                                            cAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCg                                                     >  1:527154/1‑101 (MQ=12)                                                            cAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCg                                                     >  2:3867631/1‑101 (MQ=12)                                                             aaaTATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACCGC.........CG.CGCCGCCCCCCTCTTCGCCGCCCTCGTCAACGCCGCGATCAGACTGTGCgg                                                    >  1:56261/1‑101 (MQ=9)                                                             aaaTATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCgg                                                    >  1:3107660/1‑101 (MQ=12)                                                             aaaTATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCgg                                                    >  1:4808524/1‑101 (MQ=12)                                                             aaaTATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCgg                                                    >  2:2291770/1‑101 (MQ=12)                                                              aaTATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCGGCGCGTCACAGC.........CG.CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCggg                                                   >  2:70316/1‑101 (MQ=12)                                                               atatCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GCGCGTCACAGCCGCGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGc                                                  >  2:4340487/1‑101 (MQ=12)                                                               atatCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GCGCGTCACAGCCGCGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGc                                                  >  1:2314399/1‑101 (MQ=12)                                                               atatCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GCGCGTCACAGCCGCGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGc                                                  >  2:3464172/1‑101 (MQ=12)                                                               atatCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GCGCGTCACAGCCGCGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGACCAGACTGTGCGGGc                                                  >  2:4115729/1‑101 (MQ=12)                                                                                                                tcacagccgcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCAt           <  1:636218/92‑1 (MQ=255)                                                                                                                tcacagccgcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCAt           <  2:2709884/92‑1 (MQ=255)                                                                                                                gcacagccgcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCAt           <  2:2202735/92‑1 (MQ=255)                                                                                                                 cacagccgcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATg          >  1:2702584/9‑101 (MQ=255)                                                                                                                   cagccgcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATGAt        >  2:3298981/7‑101 (MQ=255)                                                                                                                   cagccgcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATGAt        >  2:2930757/7‑101 (MQ=255)                                                                                                                   cagccgcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATGAt        <  1:3364006/95‑1 (MQ=255)                                                                                                                    agccgcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATGATc       >  1:2714011/6‑101 (MQ=255)                                                                                                                    agccgcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATGATc       >  2:3449765/6‑101 (MQ=255)                                                                                                                    agccgcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATGATc       >  2:437293/6‑101 (MQ=255)                                                                                                                      ccgcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGTCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATGATCgg     <  1:4801824/98‑1 (MQ=255)                                                                                                                       cgcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATGATCggg    >  2:4835161/3‑101 (MQ=255)                                                                                                                        gcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCGTAGGCCGTGCCATGATCGGGc   <  2:527075/100‑1 (MQ=255)                                                                                                                        gcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATGATCGGGc   <  2:2314235/100‑1 (MQ=255)                                                                                                                        gcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATGATCGGGc   <  1:1542671/100‑1 (MQ=255)                                                                                                                        gcgccgcCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATGATCGGGc   <  2:188297/100‑1 (MQ=255)                                                                                                                         cgccgcCCCCATCGTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGGGCCCGCAATGTCATAGGCCGTGCCATGATCGGGCg  <  1:3831276/101‑1 (MQ=255)                                                                                                                         |                                                                                                     CAAGGGCGGCAGCCCGTCAATCGCAGCCAAAGCCCGTCCCCTTCCTTTTCATCTTGCTTCAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCG..........GC.........C..CGCCGCCCCCATCTTCGCCGCCATCGTCAAGGCCGCGATCAGACTGTGCGGGCTGGCCTTGCCGGTGCCCGCAATGTCATAGGCCGTGCCATGATCGGGCG  >  NC_014034/2880484‑2880683 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG