New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2188415 =	167 (0.700)	17 (0.070)	4/194	27.2	0.15	intergenic (+76/+152)	feoB2/allA	ferrous iron transport protein B/ureidoglycolate hydrolase
	?	NC_014034	2747886 =	30 (0.120)					intergenic (‑218/+75)	RCAP_rcc02553/RCAP_rcc02554	hypothetical protein/NmrA family protein
Rejected: Position hash score below cutoff.

GTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCC.GCGGCCGAGAAGCGCCCGCC.GGCCGGCTGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGTTT  >  NC_014034/2747800‑2747986                                                                                         |                                                                                                     gTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCCGCCCGAGGGCCTTTGCGc                                                                                          >  2:880316/1‑101 (MQ=18)                                    ggCGGCGCCCGCCCCGGCGGGCGAGATGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGcc                                                       <  1:3227835/101‑1 (MQ=17)                                              ggcccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATgg                                             >  2:2821873/1‑101 (MQ=18)                                              ggcccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATgg                                             >  2:1751191/1‑101 (MQ=18)                                                cccggcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCATAGGACCTCTGTGACGCATGGTCAAGGCGATGGcc                                           >  2:4209726/5‑101 (MQ=18)                                                    gcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGGGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTgg                                       >  2:4059751/1‑101 (MQ=21)                                                    gcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCTCAGGACCTCTGTGACGCCTGGCTAAGGCGATGGCCCTgg                                       >  2:328431/1‑101 (MQ=18)                                                     cgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGc                                      >  2:2560535/1‑101 (MQ=21)                                                     cgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGc                                      >  2:1207904/1‑101 (MQ=21)                                                      gggcGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGcc                                     >  2:412059/4‑101 (MQ=21)                                                       ggcGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCa                                    >  1:1871490/3‑101 (MQ=21)                                                         cGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAg                                  >  2:4009722/1‑101 (MQ=21)                                                          gagaAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAgg                                 >  2:1214556/1‑101 (MQ=21)                                                          gagaAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAgg                                 >  2:4091709/1‑101 (MQ=21)                                                             acgcgcCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGGCCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCa                              <  1:328484/99‑1 (MQ=18)                                                             aaGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATCGCCAAGGCGATGGACTTGGCCAAGGTCa                              >  2:2924502/1‑101 (MQ=21)                                                                      ccgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGcc                     >  1:3591268/4‑101 (MQ=255)                                                                      ccgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGcc                     <  1:880418/98‑1 (MQ=255)                                                                      ccgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGcc                     >  2:363469/4‑101 (MQ=255)                                                                       cgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCa                    >  2:4089283/3‑101 (MQ=255)                                                                       cgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCa                    >  2:4397434/3‑101 (MQ=255)                                                                       cgggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCa                    >  2:77048/3‑101 (MQ=255)                                                                        gggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAg                   >  1:3730075/2‑101 (MQ=255)                                                                        gggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGCCACGGGACCTCTGTGACGCATGCCCAAGGCGATGGCCTGGGCCAGGGTCAGCTCATGCCAg                   >  1:2480665/2‑101 (MQ=21)                                                                         ggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAgc                  >  2:2131794/1‑101 (MQ=255)                                                                         ggccgggCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAgc                  >  1:1597133/1‑101 (MQ=255)                                                                           ccgggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAgcgc                >  2:1302481/7‑101 (MQ=255)                                                                            cgggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgcc               >  1:850567/6‑101 (MQ=255)                                                                             gggcgctgcCCGAGGGCCTTTGGGCCCTCGCGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCCAGGTCAGCTCATGCCAGcgccg              >  2:850825/5‑101 (MQ=255)                                                                              ggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgccgc             >  2:168472/4‑101 (MQ=255)                                                                              ggcgctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGcgccgc             >  1:445109/4‑101 (MQ=255)                                                                                 gctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGccgcccg          >  1:907744/1‑101 (MQ=255)                                                                                 gctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGccgcccg          >  2:4830271/1‑101 (MQ=255)                                                                                  ctgcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGccgcccgc         >  1:3887301/1‑101 (MQ=255)                                                                                    gcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCAc       >  2:3181175/1‑101 (MQ=255)                                                                                    gcCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCAc       >  2:4508120/1‑101 (MQ=255)                                                                                    gcCCGAGGGCCTTTGGGCCCTCGGGGGGCACAGGCCCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCCCCGCCCGCAc       >  1:108057/1‑101 (MQ=255)                                                                                      ccGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACgg     >  1:60819/1‑101 (MQ=255)                                                                                       cGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGt    >  2:4656099/1‑101 (MQ=255)                                                                                       cGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGt    >  1:1818137/1‑101 (MQ=255)                                                                                        gAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGtt   <  1:4010024/101‑1 (MQ=255)                                                                                        gAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGtt   >  1:4129193/1‑101 (MQ=255)                                                                                        gAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGtt   >  2:3706994/1‑101 (MQ=255)                                                                                        gAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGACGCCCGCACGGtt   >  2:609172/1‑101 (MQ=255)                                                                                         aGGGCCTTTGGGCCCTCGGTGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGttt  >  1:3792812/1‑101 (MQ=255)                                                                                         aGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGCttt  >  2:1155639/1‑101 (MQ=255)                                                                                         aGGGCCTTTGGGCCCTCGGGGGGCACAGAACCTCTGTGACGGATGGACAAGGCGATGACCTTGGCCACGGCCAGCTCATGCGAGCTCCGGCCACCCGGttt  >  2:2618655/1‑101 (MQ=255)                                                                                         |                                                                                                     GTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCC.GCGGCCGAGAAGCGCCCGCC.GGCCGGCTGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCATGCCAGCGCCGCCCGCACGGTTT  >  NC_014034/2747800‑2747986 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG