New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 119363132 (0.070)47 (0.110) 18/192 29.3 0.44 intergenic (+96/‑155) metK/trmB methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
?NC_014034 = 1732863 86 (0.190)intergenic (‑287/‑116) RCAP_rcc01601/tgt FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

GGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGG....................................................................................................  >  NC_014034/1193529‑1193631
....................................................................................................GGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGG  <  NC_014034/1732863‑1732764
                                                                                                                                                                                                           
    gGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATTTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGG                                                                                                    <  2:6054162/100‑1 (MQ=1)
     GAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGG                                                                                                   <  1:1402744/101‑1 (MQ=1)
     GAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGCCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGG                                                                                                   <  2:8816646/101‑1 (MQ=1)
      AGCCGGTTTCAAAAGATCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGC                                                                                                  <  2:5203268/101‑1 (MQ=1)
       GCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCT                                                                                                 <  2:4897209/101‑1 (MQ=1)
       GCCGGTTCCAAAAGATCACGGAGAAGGGGCCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCT                                                                                                 <  2:5932513/101‑1 (MQ=0)
         CGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTcc                                                                                               <  2:3935460/101‑3 (MQ=31)
         CGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTcc                                                                                               <  1:5054237/101‑3 (MQ=31)
         CGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTcc                                                                                               <  1:4749382/101‑3 (MQ=31)
          GGTTTCAAAAGATCACGGGGCAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGacaccg                                                                                              <  1:8836301/101‑7 (MQ=0)
          GGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTccg                                                                                              <  2:5836651/101‑4 (MQ=32)
           GTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGgtccgc                                                                                             >  1:4300170/1‑95 (MQ=17)
           GTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTccgc                                                                                             <  1:7434844/101‑5 (MQ=32)
             TTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCC                                                                                           <  1:4877857/101‑1 (MQ=32)
             TTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCC                                                                                           <  2:1418558/101‑1 (MQ=32)
             TTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCC                                                                                           <  2:2783940/101‑1 (MQ=32)
             TTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCCCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCC                                                                                           <  1:5102858/101‑1 (MQ=17)
               CAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCC                                                                                         <  1:7450123/101‑1 (MQ=32)
               CAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCC                                                                                         <  1:3028652/101‑1 (MQ=32)
                 AAAGATCAGGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCG                                                                                       <  1:5548842/101‑1 (MQ=17)
                 AAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCG                                                                                       <  1:8473186/101‑1 (MQ=32)
                  AAGATCACGGGGAAGGGGGCTTCGCCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGC                                                                                      <  1:2008456/101‑1 (MQ=17)
                     ATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACC                                                                                   <  1:158411/101‑1 (MQ=32)
                       cgCGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCC                                                                                 <  2:868819/99‑1 (MQ=17)
                        cCGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCC                                                                                <  2:6471612/100‑1 (MQ=17)
                        cCGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCC                                                                                <  2:6444075/100‑1 (MQ=17)
                                                              gggaagcTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGGAAAGCGG                                          >  2:8669873/8‑101 (MQ=0)
                                                                      TTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTG                                  <  2:3870616/101‑1 (MQ=1)
                                                                       TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGCAAAGAAAGAAGGGCGTAGTTTGCCTAGGAAAAGCGGGGCCCTTGC                                 >  2:929356/1‑101 (MQ=0)
                                                                       TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGC                                 >  1:921973/1‑101 (MQ=1)
                                                                        CGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCC                                >  2:7740725/1‑101 (MQ=1)
                                                                        CGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCC                                >  2:8963130/1‑101 (MQ=1)
                                                                        CGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCC                                >  1:7822077/1‑101 (MQ=1)
                                                                        CGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAAAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCCTGCC                                >  1:4492154/1‑101 (MQ=0)
                                                                          CCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCATATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTG                              >  2:934971/1‑101 (MQ=1)
                                                                              GGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTCTCCTGTTGc                          >  2:6776328/1‑100 (MQ=0)
                                                                               GGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGAC                         >  1:3344173/1‑101 (MQ=1)
                                                                                  AAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCG                      >  2:5392516/1‑101 (MQ=1)
                                                                                  AAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCCGTTGACGCG                      >  1:6620178/1‑101 (MQ=1)
                                                                                        GAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGC                >  2:2548398/1‑101 (MQ=1)
                                                                                         AGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGGATTTTGCCTAGGAAAAGCGGGGACCTTGCCTGTTGACGCGGGCGGCA               >  2:4000740/1‑101 (MQ=0)
                                                                                            CGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGGATGC            >  1:1064219/1‑101 (MQ=1)
                                                                                             GACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCG           >  1:5551296/1‑101 (MQ=1)
                                                                                                CCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCT        <  2:3766251/101‑1 (MQ=1)
                                                                                                 CGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTG       >  1:1814054/1‑101 (MQ=1)
                                                                                                  GCGGGGGGCTCCCCCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGC      <  2:2729958/101‑1 (MQ=0)
                                                                                                                                                                                                           
GGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGG....................................................................................................  >  NC_014034/1193529‑1193631
....................................................................................................GGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGG  <  NC_014034/1732863‑1732764

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 17 ≤  ATCG  < 27 ≤  ATCG  < 39 ≤  ATCG