New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1193631	32 (0.070)	47 (0.110)	18/192	29.3	0.44	intergenic (+96/‑155)	metK/trmB	methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
	?	NC_014034	= 1732863	86 (0.190)					intergenic (‑287/‑116)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

TCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGCAT  >  NC_014034/1193531‑1193731                                                                                                         |                                                                                                     tCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggg                                                                                                      <  2:7911564/101‑1 (MQ=255)   ggAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATTTTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggg                                                                                                    <  2:6054162/100‑3 (MQ=255)    gAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...gggggg                                                                                                   <  1:1402744/101‑4 (MQ=255)    gAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGCCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...gggggg                                                                                                   <  2:8816646/101‑4 (MQ=255)     aGCCGGTTTCAAAAGATCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggc                                                                                                  <  2:5203268/101‑5 (MQ=255)      gCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggct                                                                                                 <  2:4897209/101‑6 (MQ=255)      gCCGGTTCCAAAAGATCACGGAGAAGGGGCCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggct                                                                                                 <  2:5932513/101‑6 (MQ=37)        cGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                                                               <  2:3935460/101‑8 (MQ=255)        cGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                                                               <  1:5054237/101‑8 (MQ=255)        cGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                                                               <  1:4749382/101‑8 (MQ=255)         ggTTTCAAAAGATCACGGGGCAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...gggggacaccg                                                                                              <  1:8836301/101‑9 (MQ=255)         ggTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctccg                                                                                              <  2:5836651/101‑9 (MQ=255)          gTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...gggggggtccgc                                                                                             >  1:4300170/1‑92 (MQ=255)          gTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctccgc                                                                                             <  1:7434844/101‑10 (MQ=255)               aaagGATCATGGGGAAGGGGCTTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTCCGCCCCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGcccccc                                                                                           <  2:5913147/101‑1 (MQ=18)                aaagttcggggggAAGGGGCTTCCGGCCCCCTTTTTCA.TCCGTTGCGGGATATTCCCCCGCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                                          <  2:6784505/92‑1 (MQ=12)                aaaGATCAGGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                                          <  1:5548842/101‑1 (MQ=21)                aaaGATCACGGGGAGGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTCCAGGATATTTCGCCCCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                                          <  1:239399/101‑1 (MQ=21)                aaaGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                                          <  1:8473186/101‑1 (MQ=25)                aaaGAGCACGGGGAGGGGGGCTTCGGCCCCCTTTTTCA.TGAGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                                          <  1:1813190/101‑1 (MQ=21)                 aaGATCAGGGGGAAGGGGCCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGc                                                                                         <  1:826944/101‑1 (MQ=21)                 aaGATCACGGGGAAGGGGGCTTCGCCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGc                                                                                         <  1:2008456/101‑1 (MQ=21)                   gctcggggggAAGCGGGCTTCGCCCCCCTTTTTCA.TGCGTTGCGGGATCTTTCCCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAc                                                                                       <  1:5436756/95‑1 (MQ=17)                    aTCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcc                                                                                      <  2:8163754/101‑1 (MQ=21)                    aTCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcc                                                                                      <  1:158411/101‑1 (MQ=21)                      cgcGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcccc                                                                                    <  2:868819/99‑1 (MQ=21)                       ccGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAccccc                                                                                   <  2:6444075/100‑1 (MQ=21)                       ccGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAccccc                                                                                   <  2:6471612/100‑1 (MQ=21)                       aCGGGGAGGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAccccc                                                                                   <  1:1825110/101‑1 (MQ=18)                            gAACGGGGCTTTCCCCCCCTGTTTCATTTCTTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGc                                                                               <  2:2964002/101‑1 (MQ=2)                                  ggCTTCGCCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCGCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTAtttt                                                                        <  1:7904473/101‑1 (MQ=17)                                   gCTTCGGCCCCTTTTTTCA.GGCGTTGCAGGATTTTTCGCCCCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTg                                                                       <  2:6589588/101‑1 (MQ=14)                                     ttCGGCCCCCTTTTTTA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCTCCCCGCACCCCCCGGCGCATCCTGcc                                                                     >  1:1133335/1‑101 (MQ=14)                                      tCGTCCCCCTTTTTCA.GGCGTTGCAGGTTATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCa                                                                    <  1:549136/101‑1 (MQ=14)                                           ccccTTTTTCA.TGCGTTGCAGGATTTTCCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGaa                                                               <  1:2393702/101‑1 (MQ=14)                                             ccTTTTTCA.TGCGTTGCAGGATATTTCGCCCCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGaaaa                                                             <  1:2833702/101‑1 (MQ=14)                                              cTTTTTCG.TGGTTGGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAg                                                            <  2:5343172/101‑1 (MQ=11)                                                           tggagggATATTCCGCCGCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCggg                                                <  1:2885000/96‑1 (MQ=11)                                                              cAGGATACTTCGCCGCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAg                                             <  1:1544122/101‑1 (MQ=14)                                                               gggATTTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAgg                                            <  1:2679075/100‑1 (MQ=11)                                                                ggATTTTCCGCCCCGGGCAGGCCGGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAggg                                           <  1:8662120/101‑1 (MQ=11)                                                                 gATATTCCGCCGCGGGCAAGCCCGGGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGt                                          <  2:6932919/101‑1 (MQ=14)                                                                   tatTCCGCCGCGGGCAACCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTcg                                        <  2:8666382/101‑1 (MQ=14)                                                                     ttcccccccGGGCAGGCCGGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTcgcg                                      <  1:8762875/93‑1 (MQ=11)                                                                                  aaccccGGGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCTGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCcg                         <  2:2152338/98‑1 (MQ=17)                                                                                             gacccgcggggggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCt              <  1:528653/91‑1 (MQ=255)                                                                                                  gcggggggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCa         <  2:6360939/96‑1 (MQ=255)                                                                                                   cggggggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCaa        <  2:7291996/97‑1 (MQ=255)                                                                                                      ggggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAg     >  2:4977178/2‑101 (MQ=255)                                                                                                       gggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGc    >  1:6936349/1‑101 (MQ=255)                                                                                                       gggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGc    <  2:1133317/101‑1 (MQ=255)                                                                                                       gggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGc    >  2:8715571/1‑101 (MQ=255)                                                                                                        ggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGcc   >  2:5090738/1‑100 (MQ=255)                                                                                                         gCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGCAt  >  1:8175756/1‑101 (MQ=255)                                                                                                         |                                                                                                     TCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGCAT  >  NC_014034/1193531‑1193731 Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 18 ≤  ATCG  < 31 ≤  ATCG  < 39 ≤  ATCG