New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1699960	91 (0.220)	38 (0.090)	10/182	33.4	0.28	intergenic (+33/+10)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
	?	NC_014034	1965264 =	107 (0.230)					intergenic (+32/+60)	bdhA/RCAP_rcc01818	3‑hydroxybutyrate dehydrogenase/hypothetical protein
Rejected: Position hash score below cutoff.

GGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGA........................  >  NC_014034/1699852‑1699960 ....................................................................................................CCGAGGCGACCCGCCGCGGGCTCCGCCCCGGAC  >  NC_014034/1965264‑1965287                                                                                                                                                TCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGAC                         <  1:6306643/101‑1 (MQ=1)          TCGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGAC                         <  1:5821519/101‑1 (MQ=1)          TCGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGAC                         <  2:762969/101‑1 (MQ=1)            gcgGGAGGGGGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCC                       <  1:5575189/98‑1 (MQ=0)            gcgGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCC                       <  2:3280004/98‑1 (MQ=1)            GCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCC                       <  2:8675211/101‑1 (MQ=1)             CTGGGGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCG                      <  1:287534/101‑1 (MQ=1)             CTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCG                      >  2:5548035/1‑101 (MQ=1)              ggggGGGGGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGC                     <  1:5049692/97‑1 (MQ=0)              TGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGC                     >  2:2709237/1‑101 (MQ=1)              TGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGC                     >  1:1470284/1‑101 (MQ=1)               GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCC                    >  2:261125/1‑101 (MQ=1)               GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCC                    >  2:5295153/1‑101 (MQ=1)               GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCC                    >  2:2042141/1‑101 (MQ=1)               GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCC                    >  2:1638189/1‑101 (MQ=1)               GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCC                    >  2:1049023/1‑101 (MQ=1)                GAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCc                   >  1:4403182/1‑100 (MQ=1)                 AGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCcg                  >  2:1557554/1‑99 (MQ=1)                 AGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCcg                  >  1:394021/1‑99 (MQ=1)                  GGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCcgg                 >  1:6369927/1‑98 (MQ=1)                  GGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCcgg                 >  1:275126/1‑98 (MQ=1)                  GGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGgg                 >  2:2573763/1‑99 (MQ=1)                   GGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGG                >  2:3768735/1‑101 (MQ=1)                   GGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGG                >  2:2424353/1‑101 (MQ=1)                     AGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGC              >  1:5252653/1‑101 (MQ=1)                       CCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCgc            >  1:1211742/1‑99 (MQ=1)                       CCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTC            <  1:5112229/101‑1 (MQ=1)                         GCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCcgggggcccc          >  1:4955262/1‑91 (MQ=0)                          CCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGC         >  2:4871144/1‑101 (MQ=1)                           CGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGggcgccc        >  1:7182935/1‑94 (MQ=0)                           CGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGggccccc        >  1:7938717/1‑94 (MQ=0)                           CGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCCGGGGCGCCGCC        >  2:8329058/1‑101 (MQ=0)                            GATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCGCCGCCC       >  1:2978695/1‑101 (MQ=1)                            GATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCCGGGGCTCCGCCC       >  2:6899510/1‑101 (MQ=1)                               CTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGGTCCGCCCCcc    >  2:3967193/1‑99 (MQ=1)                                 CGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCccgc  >  2:8716255/1‑97 (MQ=1)                                 CGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCGAg  >  2:2060394/1‑100 (MQ=1)                                 CGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCGCCGCCCCccgg  >  2:8375979/1‑97 (MQ=0)                                                                                                                                       GGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGCGCCGAGGCGA........................  >  NC_014034/1699852‑1699960 ....................................................................................................CCGAGGCGACCCGCCGCGGGCTCCGCCCCGGAC  >  NC_014034/1965264‑1965287 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG