New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2287727	4 (0.010)	40 (0.140)	11/126	26.1	0.23	intergenic (‑124/+111)	RCAP_rcc02125/acsA1	hypothetical protein/acetate‑‑CoA ligase
	?	NC_014034	= 2490469	267 (0.580)					intergenic (‑82/+10)	soxD/soxB	sarcosine oxidase subunit delta/sarcosine oxidase subunit beta
Rejected: Position hash score below cutoff.

GTAGCGGCGGGGGTTTCACACCCCCGCACCCCCGTGG...................................................................................................................................  >  NC_014034/2287691‑2287727 ..........................................................................CCCTTTCATCTTGCCCGAAATATCCCGCGGGGGTCCGGGGGCGCGAAGCCCCCGGCGCCTGCCCAGCCAAAGGCCTGCTGACATGCTGACACTG  <  NC_014034/2490469‑2490376                                      |||||||||||||||||||||||||||||||||||||                                                                                               taAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCG                                                                     >  2:3544235/3‑101 (MQ=255) taAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCG                                                                     >  1:6119991/3‑101 (MQ=255)  aAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGC                                                                    >  1:325246/2‑101 (MQ=255)  aAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGC                                                                    >  1:8239982/2‑101 (MQ=255)  aAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGC                                                                    >  1:5456363/2‑101 (MQ=255)  aAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGC                                                                    >  1:4476032/2‑101 (MQ=255)   AGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCG                                                                   >  1:2243126/1‑101 (MQ=255)    gctGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGG                                                                  >  1:869906/4‑101 (MQ=255)     ctGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGG                                                                 <  2:5456178/99‑1 (MQ=255)      tGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGG                                                                <  2:3869178/100‑1 (MQ=255)       GCGGGGGTTTCACACGCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGG                                                               >  1:7246037/1‑101 (MQ=255)       GCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGG                                                               >  1:979105/1‑101 (MQ=255)       GCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGG                                                               <  1:7511533/101‑1 (MQ=255)       GCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGG                                                               >  1:4105497/1‑101 (MQ=255)        CGGGGGTTTCACCCCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGT                                                              <  2:4587631/101‑1 (MQ=255)        CGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGg                                                              >  2:7444510/1‑100 (MQ=255)        CGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGg                                                              >  1:845905/1‑100 (MQ=255)        CGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGT                                                              <  2:743402/101‑1 (MQ=255)        CGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGT                                                              >  1:418755/1‑101 (MQ=255)         GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTg                                                             <  1:6474496/101‑2 (MQ=255)         GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTg                                                             >  1:6345586/1‑100 (MQ=255)         GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTg                                                             >  1:4034766/1‑100 (MQ=255)         GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTg                                                             <  1:332018/101‑2 (MQ=255)         GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTg                                                             >  1:4424884/1‑100 (MQ=255)          GGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTga                                                            <  2:3373239/101‑3 (MQ=255)          GGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTga                                                            <  1:8734175/101‑3 (MQ=255)          GGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTga                                                            <  2:7696421/101‑3 (MQ=255)          GGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTga                                                            >  1:5622190/1‑99 (MQ=255)           GGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaa                                                           <  1:968533/101‑4 (MQ=255)           GGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaa                                                           <  1:7676183/101‑4 (MQ=255)           GGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaa                                                           <  2:6470995/101‑4 (MQ=255)           GGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaa                                                           <  2:4799442/101‑4 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat                                                          <  2:5804001/101‑5 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat                                                          <  2:8917869/101‑5 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat                                                          <  2:5005005/101‑5 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat                                                          <  2:4748001/101‑5 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat                                                          <  2:3921342/101‑5 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat                                                          >  1:8529348/1‑97 (MQ=255)            GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat                                                          <  1:4585339/101‑5 (MQ=255)             GTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaatt                                                         >  2:2983323/1‑96 (MQ=255)                                                                    ccctccCCCCTTTCATCTTGCCCGAAATATCCCGCGGGGGTCCGGGGGCGCGAAGCCCCCGGCGCCTGCCCAGCCAAAGGCCTGCTGACATGCTGACACTG  <  2:8683627/95‑1 (MQ=0)                                      |||||||||||||||||||||||||||||||||||||                                                                                               GTAGCGGCGGGGGTTTCACACCCCCGCACCCCCGTGG...................................................................................................................................  >  NC_014034/2287691‑2287727 ..........................................................................CCCTTTCATCTTGCCCGAAATATCCCGCGGGGGTCCGGGGGCGCGAAGCCCCCGGCGCCTGCCCAGCCAAAGGCCTGCTGACATGCTGACACTG  <  NC_014034/2490469‑2490376 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG