New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2287727	4 (0.010)	40 (0.140)	11/126	26.1	0.23	intergenic (‑124/+111)	RCAP_rcc02125/acsA1	hypothetical protein/acetate‑‑CoA ligase
	?	NC_014034	= 2490469	267 (0.580)					intergenic (‑82/+10)	soxD/soxB	sarcosine oxidase subunit delta/sarcosine oxidase subunit beta
Rejected: Position hash score below cutoff.

GGCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGTTTCACACCCCCGCACCCCCGTGGCGTAGTTGCGCCAGGAAAAAGCACAGA.CTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGGAGAGGTGGCGCGGGCAAGTCGGGGGG  >  NC_014034/2287636‑2287818                                                                                            |                                                                                             ggCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGTTTTCCCCCCCGCCCCCCCCCGGCggcggtgg                                                                                     >  2:7869530/1‑94 (MQ=1)  gCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGGTTCCACCCCCCCCCCCCCCCGGCggcgcttgg                                                                                    >  2:450892/1‑93 (MQ=1)   cTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGTTTACCCCCCCGCCCCCCCCCGGCggcgctgtgc                                                                                   >  2:4138117/1‑92 (MQ=1)    ttGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGGTCAAAAGCCCCCACCCCCCCGGCgggcatgcggc                                                                                  >  1:2660031/1‑91 (MQ=1)                gTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGTTCAAACCCCCCCACCCCCCTGGCGCTGGTGGGCCCGGaacaaagac                                                                      >  2:890487/1‑97 (MQ=1)                gTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGGTTTCACCCCCCCACCCCCCCGGCGGCGTTGCGCCCGCGAAAAAcac                                                                      >  1:6749415/1‑101 (MQ=0)                        gtgtTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGTTTCCACCCCCCCCCCCCCCGGGCGGCGGTTGGCCCGGGAAAAACACAAA.Ccttt                                                             >  1:5315778/1‑101 (MQ=0)                        gtgtTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGTTTCCACCCCCCCCACCCCCCGGCGGACTTGCGCCCCGGAAAAAAACAGaacttt                                                              >  2:4759462/1‑96 (MQ=0)                             gCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGTTCACCCCCCCCCACCCCCCCGGCGCAGGTGGGCCCGGGAAAAGGACACAGCTTTTCccc                                                         >  2:2299886/1‑101 (MQ=0)                                     cGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGGGTTTCACCCCCCCCCCCCCCCGGCGGGGGTGGGCCCGGGAAAAACACAGA.CTTTTTTCCCTTCCcccc                                                >  1:6088480/1‑100 (MQ=0)                                            ctTGACCCGCCCGTAGCGGCGGGGGGTTTTCACCCCCCCACCCCCCCGGGGGGGTTGCGCCCGGGAAAAGCACAAACCTTTTTCCCGTCCCCCCCggggaa                                          >  2:4801871/1‑97 (MQ=0)                                              tGACCCGCCCGTAGCGGCGGGGGGTTTACACCCCCCCCCCCCCCTGGCGGAGTTGCGCCCGGGAAAAAGACAGA.CTTTTTGCCGTTTCCCCCCGCGCCAAt                                       >  2:485422/1‑101 (MQ=0)                                                                                   acccccgTGGCGTAGTTGGGCCAGGAAAAAGCACAGA.CTTTTGCCGGTTCACCCGGGCGGAAATCTCCGGGGGGGAGCGGGGGCGCGGGGAATGAgggggg  >  2:2475336/1‑101 (MQ=1)                                                                                            |                                                                                             GGCTTGCGCGGCGCGGTTTGGCCGTGTTGCCCCGGCCGTTGCTCTTGACCCGCCCGTAGCGGCGGGGGTTTCACACCCCCGCACCCCCGTGGCGTAGTTGCGCCAGGAAAAAGCACAGA.CTTTTGCCCGTTCACCCTGGCGCAAATCTCCCGGGGGGAGAGGTGGCGCGGGCAAGTCGGGGGG  >  NC_014034/2287636‑2287818 Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 23 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG