BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2330179 =	144 (0.330)	69 (0.160)	17/190	29.7	0.23	intergenic (+154/+158)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
*	?	NC_014034	3276378 =	325 (0.710)	69 (0.160)	17/190	29.7	0.23	intergenic (‑130/+119)	RCAP_rcc03082/RCAP_rcc03083	lipoprotein/membrane bound YbgT‑like protein
Rejected: Position hash score below cutoff.


CGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGG......................................................................................................  <  NC_014034/2330283‑2330179


....................................................................................................CGGGGGCGGAGCCCCCG.G.CGGGTCGCCGCGCGGCCGCGCGGCGAAACAAAGGACCGACCGGGCAGCCCCCCGGTCGGCCAGTGAACCCGAAACGCGAAGGGACGC  >  NC_014034/3276378‑3276477


     TCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGG                                                                                                       <  1:6494911/101‑1 (MQ=1)


      CTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGC                                                                                                      <  1:1802358/101‑1 (MQ=1)


      CTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGC                                                                                                      >  1:2616822/1‑101 (MQ=1)


      CTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGC                                                                                                      <  1:2738513/101‑1 (MQ=1)


      CTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGC                                                                                                      >  1:7714350/1‑101 (MQ=1)


       TTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCG                                                                                                     <  2:3653227/101‑1 (MQ=1)


        TTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGG                                                                                                    <  2:6384677/101‑1 (MQ=1)


        TTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGG                                                                                                    <  2:3622222/101‑1 (MQ=1)


        TTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGG                                                                                                    >  2:3512847/1‑101 (MQ=1)


        TTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGG                                                                                                    >  1:8890607/1‑101 (MQ=1)


         TGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGA                                                                                                   >  2:6556200/1‑101 (MQ=1)


         TGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGGGCGGGGGCGGA                                                                                                   >  2:3844652/1‑101 (MQ=1)


          GGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAG                                                                                                  <  2:926224/101‑1 (MQ=1)


          GGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAG                                                                                                  >  2:3338735/1‑101 (MQ=1)


          GGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAG                                                                                                  <  1:7542780/101‑1 (MQ=1)


          GGCCCCAGGCGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAG                                                                                                  >  2:8197461/1‑101 (MQ=1)


           GCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGC                                                                                                 <  1:1864588/101‑1 (MQ=1)


            CCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCC                                                                                                <  2:2442547/101‑1 (MQ=1)


            CCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCC                                                                                                <  1:2044991/101‑1 (MQ=1)


              CCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCC                                                                                              >  1:3408849/1‑101 (MQ=1)


              CCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCC                                                                                              <  2:3125504/101‑1 (MQ=1)


               CAGGTGAAAGGCGCCCGGGCCGCCGGTGACCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGCGGGTGCGGGGGCGGAGCCCac                                                                                             >  2:5927235/1‑99 (MQ=0)


               CAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCC                                                                                             <  2:2240470/101‑1 (MQ=1)


               CAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCC                                                                                             <  1:3251473/101‑1 (MQ=1)


               CAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCC                                                                                             >  1:4970507/1‑101 (MQ=1)


               CAGGTGAAACCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCC                                                                                             <  2:5152762/101‑1 (MQ=1)


                AGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG                                                                                            >  2:6414103/1‑101 (MQ=1)


                AGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG                                                                                            <  2:61668/101‑1 (MQ=1)


                 GGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGc                                                                                           >  1:4893771/1‑100 (MQ=1)


                   TGAACGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGccc                                                                                         <  1:7358714/101‑4 (MQ=14)


                   TGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGccc                                                                                         >  2:4905411/1‑98 (MQ=31)


                   TGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGccc                                                                                         <  1:4876337/101‑4 (MQ=31)


                   TGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGccc                                                                                         >  2:8428962/1‑98 (MQ=31)


                    GAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccg                                                                                        <  1:2520852/101‑5 (MQ=32)


                    GAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccg                                                                                        >  2:664981/1‑97 (MQ=32)


                    GAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccg                                                                                        >  1:1876139/1‑97 (MQ=32)


                     AAAGCCGCCCGGGCCGCCGGTGATTCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgg                                                                                       >  2:4374494/1‑96 (MQ=17)


                     AAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgg                                                                                       >  2:6308445/1‑96 (MQ=32)


                     AAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgg                                                                                       <  1:7465567/101‑6 (MQ=32)


                     AAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgg                                                                                       >  1:7463416/1‑96 (MQ=32)


                     AAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgg                                                                                       >  2:2384349/1‑96 (MQ=17)


                      AAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccggg                                                                                      >  1:2573829/1‑95 (MQ=32)


                       AGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgggt                                                                                     >  2:35082/1‑94 (MQ=32)


                       AGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgggt                                                                                     >  1:5934745/1‑94 (MQ=32)


                       AGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgggt                                                                                     >  1:2491985/1‑94 (MQ=32)


                       AGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgggc                                                                                     >  1:1339415/1‑94 (MQ=17)


                        GCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgggtc                                                                                    <  1:7300841/101‑9 (MQ=32)


                        GCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgggtc                                                                                    >  1:4857334/1‑93 (MQ=32)


                        GCCCCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGcccgggtc                                                                                    <  1:1550653/101‑9 (MQ=17)


                         CCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCG                                                                                  >  2:3396608/1‑101 (MQ=32)


                           GCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCC                                                                                <  1:6796110/101‑1 (MQ=32)


                           GCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCC                                                                                >  1:8064079/1‑101 (MQ=32)


                           GCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCC                                                                                >  2:5528777/1‑101 (MQ=32)


                           GCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCC                                                                                >  2:5328759/1‑101 (MQ=32)


                            CCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCG                                                                               >  2:5736787/1‑101 (MQ=32)


                             CCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCGC                                                                              >  1:2999324/1‑101 (MQ=32)


                              CGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCGCG                                                                             >  2:52237/1‑101 (MQ=32)


                              CGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCGCG                                                                             <  1:5034292/101‑1 (MQ=32)


                               GGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCGCGC                                                                            >  2:589335/1‑101 (MQ=32)


                               GGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCGCGC                                                                            >  2:2032809/1‑101 (MQ=32)


                               GGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCGCGC                                                                            >  1:5214111/1‑101 (MQ=32)


                               GGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCGCGC                                                                            >  2:656021/1‑101 (MQ=32)


                               GGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCGCGC                                                                            >  1:4931667/1‑101 (MQ=32)


                               GGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCGCGC                                                                            >  1:3666874/1‑101 (MQ=32)


                                GGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCGCGCc                                                                           <  2:127227/101‑2 (MQ=32)


                                GGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCGCGCc                                                                           <  2:595593/101‑2 (MQ=32)


                                 GCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCGCGCct                                                                          >  2:6345180/1‑99 (MQ=14)


                                 GCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCC.CGGGTCGCCGCGCct                                                                          <  1:3568419/101‑3 (MQ=14)


                                 GCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCct                                                                          <  1:3507921/101‑3 (MQ=14)


CGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCGGGGGTGCGGGG......................................................................................................  <  NC_014034/2330283‑2330179


....................................................................................................CGGGGGCGGAGCCCCCG.G.CGGGTCGCCGCGCGGCCGCGCGGCGAAACAAAGGACCGACCGGGCAGCCCCCCGGTCGGCCAGTGAACCCGAAACGCGAAGGGACGC  >  NC_014034/3276378‑3276477

Base quality scores:


ATCG

< 3 ≤


ATCG

< 20 ≤


ATCG

< 27 ≤


ATCG

< 33 ≤


ATCG

< 39 ≤


ATCG