New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 390845	112 (0.270)	27 (0.070)	14/178	30.3	0.21	intergenic (‑161/+128)	mipZ/rpmE	chromosome partitioning protein MipZ/50S ribosomal protein L31
	?	NC_014034	= 1732856	86 (0.190)					intergenic (‑280/‑123)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

CCGGCTACCGAAGGAAGCGCGCCGGTGCAAGGGGGGAGGCGCAAAGGGTTTGAACGGTCGCGGGGGTGTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTC....................................................................................................  >  NC_014034/390737‑390845 ...................................................................................................GGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTG  <  NC_014034/1732856‑1732757                                                                                                                                                                                                                                                                                gggaagcTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGGAAAGCGG                                                 >  2:8669873/8‑101 (MQ=0)                                                                      TTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTG                                         <  2:3870616/101‑1 (MQ=1)                                                                       TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGCAAAGAAAGAAGGGCGTAGTTTGCCTAGGAAAAGCGGGGCCCTTGC                                        >  2:929356/1‑101 (MQ=0)                                                                       TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGC                                        >  1:921973/1‑101 (MQ=1)                                                                        CGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCC                                       >  2:8963130/1‑101 (MQ=1)                                                                        CGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCC                                       >  1:7822077/1‑101 (MQ=1)                                                                        CGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCC                                       >  2:7740725/1‑101 (MQ=1)                                                                        CGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAAAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCCTGCC                                       >  1:4492154/1‑101 (MQ=0)                                                                          CCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCATATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTG                                     >  2:934971/1‑101 (MQ=1)                                                                              GGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTCTCCTGTTGc                                 >  2:6776328/1‑100 (MQ=0)                                                                               GGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGAC                                >  1:3344173/1‑101 (MQ=1)                                                                                  AAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCG                             >  2:5392516/1‑101 (MQ=1)                                                                                  AAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCCGTTGACGCG                             >  1:6620178/1‑101 (MQ=1)                                                                                        GAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGC                       >  2:2548398/1‑101 (MQ=1)                                                                                         AGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGGATTTTGCCTAGGAAAAGCGGGGACCTTGCCTGTTGACGCGGGCGGCA                      >  2:4000740/1‑101 (MQ=0)                                                                                            CGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGGATGC                   >  1:1064219/1‑101 (MQ=1)                                                                                             GACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCG                  >  1:5551296/1‑101 (MQ=1)                                                                                                CCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCT               <  2:3766251/101‑1 (MQ=1)                                                                                                 CGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTG              >  1:1814054/1‑101 (MQ=1)                                                                                                  GCGGGGGGCTCCCCCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGC             <  2:2729958/101‑1 (MQ=0)                                                                                                                                                                                                                   CCGGCTACCGAAGGAAGCGCGCCGGTGCAAGGGGGGAGGCGCAAAGGGTTTGAACGGTCGCGGGGGTGTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTC....................................................................................................  >  NC_014034/390737‑390845 ...................................................................................................GGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTG  <  NC_014034/1732856‑1732757 Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 39 ≤  ATCG