New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1193628	15 (0.050)	30 (0.100)	5/136	32.4	0.33	intergenic (+93/‑158)	metK/trmB	methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
	?	NC_014034	= 2474931	109 (0.240)					intergenic (‑94/+32)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

CGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCG  >  NC_014034/1193528‑1193708                                                                                                      |                                                                                    cGGTCTGAGCCGGTTCCAAAAGATCACGGGGAAGTGGGCTTCGCCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCcgc                                                                                     <  2:2371216/101‑1 (MQ=255)  ggTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCcgc...g                                                                                 <  1:7084062/101‑1 (MQ=255)    tCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggg                                                                               <  2:7911564/101‑1 (MQ=255)      ggAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATTTTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggg                                                                             <  2:6054162/100‑3 (MQ=255)       gAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...gggggg                                                                            <  1:1402744/101‑4 (MQ=255)       gAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGCCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...gggggg                                                                            <  2:8816646/101‑4 (MQ=255)        aGCCGGTTTCAAAAGATCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggc                                                                           <  2:5203268/101‑5 (MQ=255)         gCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggct                                                                          <  2:4897209/101‑6 (MQ=255)         gCCGGTTCCAAAAGATCACGGAGAAGGGGCCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggct                                                                          <  2:5932513/101‑6 (MQ=37)           cGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                                        <  2:3935460/101‑8 (MQ=255)           cGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                                        <  1:5054237/101‑8 (MQ=255)           cGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                                        <  1:4749382/101‑8 (MQ=255)            ggTTTCAAAAGATCACGGGGCAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...gggggacaccg                                                                       <  1:8836301/101‑9 (MQ=255)            ggTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctccg                                                                       <  2:5836651/101‑9 (MQ=255)             gTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...gggggggtccgc                                                                      >  1:4300170/1‑92 (MQ=255)             gTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctccgc                                                                      <  1:7434844/101‑10 (MQ=255)                  aaagGATCATGGGGAAGGGGCTTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTCCGCCCCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGcccccc                                                                    <  2:5913147/101‑1 (MQ=18)                   aaagttcggggggAAGGGGCTTCCGGCCCCCTTTTTCA.TCCGTTGCGGGATATTCCCCCGCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                   <  2:6784505/92‑1 (MQ=12)                   aaaGATCAGGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                   <  1:5548842/101‑1 (MQ=21)                   aaaGATCACGGGGAGGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTCCAGGATATTTCGCCCCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                   <  1:239399/101‑1 (MQ=21)                   aaaGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                   <  1:8473186/101‑1 (MQ=25)                   aaaGAGCACGGGGAGGGGGGCTTCGGCCCCCTTTTTCA.TGAGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                   <  1:1813190/101‑1 (MQ=21)                    aaGATCAGGGGGAAGGGGCCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGc                                                                  <  1:826944/101‑1 (MQ=21)                    aaGATCACGGGGAAGGGGGCTTCGCCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGc                                                                  <  1:2008456/101‑1 (MQ=21)                      gctcggggggAAGCGGGCTTCGCCCCCCTTTTTCA.TGCGTTGCGGGATCTTTCCCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAc                                                                <  1:5436756/95‑1 (MQ=17)                       aTCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcc                                                               <  2:8163754/101‑1 (MQ=21)                       aTCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcc                                                               <  1:158411/101‑1 (MQ=21)                         cgcGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcccc                                                             <  2:868819/99‑1 (MQ=21)                          ccGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAccccc                                                            <  2:6444075/100‑1 (MQ=21)                          ccGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAccccc                                                            <  2:6471612/100‑1 (MQ=21)                          aCGGGGAGGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAccccc                                                            <  1:1825110/101‑1 (MQ=18)                               gAACGGGGCTTTCCCCCCCTGTTTCATTTCTTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGc                                                        <  2:2964002/101‑1 (MQ=2)                                     ggCTTCGCCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCGCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTAtttt                                                 <  1:7904473/101‑1 (MQ=17)                                      gCTTCGGCCCCTTTTTTCA.GGCGTTGCAGGATTTTTCGCCCCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTg                                                <  2:6589588/101‑1 (MQ=14)                                        ttCGGCCCCCTTTTTTA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCTCCCCGCACCCCCCGGCGCATCCTGcc                                              >  1:1133335/1‑101 (MQ=14)                                         tCGTCCCCCTTTTTCA.GGCGTTGCAGGTTATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCa                                             <  1:549136/101‑1 (MQ=14)                                              ccccTTTTTCA.TGCGTTGCAGGATTTTCCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGaa                                        <  1:2393702/101‑1 (MQ=14)                                                ccTTTTTCA.TGCGTTGCAGGATATTTCGCCCCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGaaaa                                      <  1:2833702/101‑1 (MQ=14)                                                 cTTTTTCG.TGGTTGGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAg                                     <  2:5343172/101‑1 (MQ=11)                                                              tggagggATATTCCGCCGCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCggg                         <  1:2885000/96‑1 (MQ=11)                                                                 cAGGATACTTCGCCGCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAg                      <  1:1544122/101‑1 (MQ=14)                                                                  gggATTTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAgg                     <  1:2679075/100‑1 (MQ=11)                                                                   ggATTTTCCGCCCCGGGCAGGCCGGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAggg                    <  1:8662120/101‑1 (MQ=11)                                                                    gATATTCCGCCGCGGGCAAGCCCGGGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGt                   <  2:6932919/101‑1 (MQ=14)                                                                      tatTCCGCCGCGGGCAACCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTcg                 <  2:8666382/101‑1 (MQ=14)                                                                        ttcccccccGGGCAGGCCGGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTcgcg               <  1:8762875/93‑1 (MQ=11)                                                                                     aaccccGGGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCTGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCcg  <  2:2152338/98‑1 (MQ=17)                                                                                                      |                                                                                    CGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCA.TGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCG  >  NC_014034/1193528‑1193708 Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 17 ≤  ATCG  < 29 ≤  ATCG  < 39 ≤  ATCG