BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1103358 =	342 (0.760)	96 (0.210)	21/196	28.1	0.30	intergenic (‑358/+60)	ugpB/regA2	sn‑glycerol‑3‑phosphate‑binding periplasmic protein ugpB/photosynthetic apparatus regulatory protein RegA
*	?	NC_014034	1253897 =	102 (0.220)	96 (0.210)	21/196	28.1	0.30	intergenic (+55/+36)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
Rejected: Position hash score below cutoff.

Only 100 of 133 total aligned reads displayed.


GGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....G.....GGAG.........CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCGGGT  >  NC_014034/1253833‑1253997


ggCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCg                                                                           >  2:5836135/1‑101 (MQ=12)


gcagAAAAAACCCGCCCCCCCCCCGCTCTCATCTTGCCCTAAATCCCTCGGGGGTGCGGGGGG.....GGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCg                                                                           <  2:601479/98‑1 (MQ=2)


  cGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaa                                                                         >  2:2660637/1‑101 (MQ=12)


  cGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaa                                                                         >  2:1173669/1‑101 (MQ=12)


   gAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa                                                                        >  2:6503729/1‑101 (MQ=12)


   gAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa                                                                        >  1:6772444/1‑101 (MQ=12)


   gAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa                                                                        >  1:6546052/1‑101 (MQ=12)


    aaaTAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAAt                                                                       >  1:1417311/1‑101 (MQ=9)


    aaaTAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAAt                                                                       >  2:4533569/1‑101 (MQ=9)


    aaaTAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAAt                                                                       >  1:2727867/1‑101 (MQ=9)


    aaaTAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAAt                                                                       >  1:8663666/1‑101 (MQ=9)


    aaaTAAACCGATCCCGCCCAGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAAt                                                                       >  2:6535837/1‑101 (MQ=9)


     aaTAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATc                                                                      >  1:979518/1‑101 (MQ=9)


     aaTAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATc                                                                      >  1:5175856/1‑101 (MQ=9)


      aTAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATcc                                                                     >  1:475660/1‑101 (MQ=9)


      aTAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATcc                                                                     >  1:3401184/1‑101 (MQ=9)


      aTAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATcc                                                                     >  1:1235660/1‑101 (MQ=9)


       tAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCct                                                                    >  2:1395948/1‑101 (MQ=9)


       tAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCct                                                                    >  1:1418121/1‑101 (MQ=9)


       aaacccacccccgccccgcTCTCATCTTGCCCTAACTCCCTGGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCct                                                                    <  2:8074193/92‑1 (MQ=0)


        aaaCCGATCCCGCCCCGCTGTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc                                                                   >  1:5509946/1‑101 (MQ=9)


        aaaCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc                                                                   >  1:7667888/1‑101 (MQ=9)


        aaaCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc                                                                   >  1:5025910/1‑101 (MQ=9)


        aaaCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc                                                                   >  2:6379307/1‑101 (MQ=9)


        aaaCCGATCACGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAACTccac                                                                   >  2:5945615/1‑99 (MQ=2)


         aaCCGGTCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctct                                                                  >  1:8841053/1‑101 (MQ=2)


         aaCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctct                                                                  >  1:5134406/1‑101 (MQ=9)


         aaCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctct                                                                  >  1:4075217/1‑101 (MQ=9)


         aaCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctct                                                                  >  2:5901726/1‑101 (MQ=9)


          aCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCtctc                                                                 >  1:3100799/1‑101 (MQ=9)


          aCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCtctc                                                                 >  2:7023524/1‑101 (MQ=9)


          aCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCtctc                                                                 >  1:8534986/1‑101 (MQ=9)


           ccGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCa                                                                >  2:722753/1‑101 (MQ=9)


            cGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCAc                                                               >  1:6955682/1‑101 (MQ=9)


            cGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGCCGGATTCCCCTCAc                                                               >  2:2173292/1‑101 (MQ=2)


             gATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACg                                                              >  1:4909665/1‑101 (MQ=9)


             gATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACg                                                              >  2:8092207/1‑101 (MQ=9)


              aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGACATCCTCTCCCgg                                                             >  2:3733071/1‑101 (MQ=9)


               tCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGc                                                            >  2:404281/1‑101 (MQ=9)


               tCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGc                                                            >  2:2050074/1‑101 (MQ=9)


               tCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGc                                                            >  2:9082893/1‑101 (MQ=9)


               tCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGGGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGc                                                            >  2:6733417/1‑101 (MQ=9)


                cccgccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCt                                                           >  2:95684/1‑101 (MQ=9)


                cccgccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCt                                                           >  1:4626118/1‑101 (MQ=9)


                   gccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTcc                                                        >  2:8436538/1‑101 (MQ=9)


                      ccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGt                                                     >  2:4908913/1‑101 (MQ=9)


                      ccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGt                                                     >  1:3873006/1‑101 (MQ=9)


                       cgcTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGtt                                                    >  1:1656071/1‑101 (MQ=9)


                        gcTCTCATCTTGCCCTAAATCCCTGGGGGGTGC.....G.....GGGGCGGACCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTc                                                   <  2:1163513/101‑1 (MQ=9)


                        gcTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTc                                                   >  1:9186792/1‑101 (MQ=9)


                        gcTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTc                                                   >  1:5717891/1‑101 (MQ=9)


                         ctctCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCa                                                  >  1:2230215/1‑101 (MQ=9)


                         ctctCATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCa                                                  >  1:4081208/1‑101 (MQ=9)


                          tctcATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAg                                                 >  1:8480789/1‑101 (MQ=9)


                          tctcATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAg                                                 >  2:1008306/1‑101 (MQ=9)


                           ctcATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAgg                                                >  1:4472095/1‑101 (MQ=9)


                           ctcATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAgg                                                >  1:869899/1‑101 (MQ=9)


                            tcATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGa                                               >  2:150018/1‑101 (MQ=9)


                            tcATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGa                                               >  2:954480/1‑101 (MQ=9)


                            tcATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGa                                               >  2:4065500/1‑101 (MQ=9)


                            tcATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGa                                               >  1:7342186/1‑101 (MQ=9)


                            tcAGCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTGTCACGGCTTCCAGTTCAGGa                                               >  1:8810848/1‑101 (MQ=9)


                             cATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa                                              >  1:9058708/1‑101 (MQ=9)


                             cATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa                                              >  2:1397449/1‑101 (MQ=9)


                             cATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa                                              >  2:4679216/1‑101 (MQ=9)


                             cATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa                                              >  2:6348156/1‑101 (MQ=9)


                             cATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa                                              >  2:5336087/1‑101 (MQ=9)


                             cATCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa                                              >  1:6366021/1‑101 (MQ=9)


                              aTCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaaa                                             >  1:4440906/1‑101 (MQ=9)


                              aTCTTGCCCTAAATACCTCGGGGGTGC.....GGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaaa                                             >  1:5817541/1‑101 (MQ=9)


                                                                         ggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAt            >  2:8340626/9‑101 (MQ=255)


                                                                         ggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAt            >  1:2593928/9‑101 (MQ=255)


                                                                         ggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAt            >  2:4784073/9‑101 (MQ=255)


                                                                         ggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAt            >  1:6252050/9‑101 (MQ=255)


                                                                         ggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAt            >  2:555277/9‑101 (MQ=255)


                                                                         ggagcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCACTGCGAt            >  1:7077297/9‑101 (MQ=255)


                                                                         ggaccccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAt            <  2:3454441/93‑1 (MQ=255)


                                                                         gccccccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAt            <  2:137421/93‑1 (MQ=255)


                                                                          gcgccccagcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAtt           <  2:1235628/93‑1 (MQ=255)


                                                                          ccccccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAtt           <  2:6031137/94‑1 (MQ=255)


                                                                           gccccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAttt          <  2:6545792/95‑1 (MQ=255)


                                                                           cccccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAttt          <  1:2702243/95‑1 (MQ=255)


                                                                           catgcccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAttt          >  2:4331217/7‑101 (MQ=255)


                                                                           agcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAttt          >  2:7903739/7‑101 (MQ=255)


                                                                           agcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAttt          >  2:7017969/7‑101 (MQ=255)


                                                                           agcccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAttt          <  2:4816373/95‑1 (MQ=255)


                                                                            cccccggcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtc         <  2:280372/95‑1 (MQ=255)


                                                                            cccccgcccGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtc         <  1:1877496/94‑1 (MQ=255)


                                                                             cccccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtct        <  2:6121955/97‑1 (MQ=255)


                                                                              ccccgcCGGGTCGCCGCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTtctc       <  2:8341546/98‑1 (MQ=255)


                                                                               cggcccGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTcc      <  1:3119042/97‑1 (MQ=255)


                                                                               ccggcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTcc      <  1:7643114/98‑1 (MQ=255)


                                                                               cccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTcc      <  1:142184/99‑1 (MQ=255)


                                                                               cccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTcc      >  2:5707086/3‑101 (MQ=255)


                                                                                ccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCg     <  1:6296051/100‑1 (MQ=255)


                                                                                ccgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCg     <  2:3856785/100‑1 (MQ=255)


                                                                                 cgcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCgg    <  1:7422218/101‑1 (MQ=255)


                                                                                  gcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCggg   >  2:3691906/1‑101 (MQ=255)


                                                                                  gcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCggg   >  2:1500946/1‑101 (MQ=255)


                                                                                   ccGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCGGGt  <  1:5149972/101‑1 (MQ=255)


GGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.....G.....GGAG.........CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCGGGT  >  NC_014034/1253833‑1253997

Base quality scores:


ATCG

< 3 ≤


ATCG

< 20 ≤


ATCG

< 29 ≤


ATCG

< 34 ≤


ATCG

< 41 ≤


ATCG