New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1253895 =	51 (0.240)	18 (0.090)	4/198	30.4	0.19	intergenic (+53/+38)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
	?	NC_014034	= 2577295	104 (0.490)					intergenic (+217/‑212)	fdx/purU	ferredoxin VI/formyltetrahydrofolate deformylase
Rejected: Position hash score below cutoff.

CGGAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGC.G...................................................................................................  <  NC_014034/1253994‑1253895 ....................................................................................................GGGGCTCCGCCCCGGACCCCCGGGATATTTTGGGCAAGATAAAAGGGGCCCGGGGTCCTGAGGCCTTCGGTCCTGCCGGGGACGGCTTTGGCTTTTCCTG  <  NC_014034/2577295‑2577197                                                                                                                                                                                                          CGGAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGC.GG                                                                                                    >  2:3905717/1‑101 (MQ=1)  GGAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGC.GGG                                                                                                   >  2:2042140/1‑101 (MQ=1)   GAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGC.GGGG                                                                                                  >  1:580820/1‑101 (MQ=1)   GAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGC.GGGG                                                                                                  <  2:2124978/101‑1 (MQ=1)    AGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGG.GGGGg                                                                                                 >  2:1133907/1‑100 (MQ=1)    AGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGC.GGGGg                                                                                                 <  2:1052656/101‑2 (MQ=1)      AAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGC.GGGGggg                                                                                               >  1:1951069/1‑98 (MQ=1)       AATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGC.GGGGgctc                                                                                              <  2:1990273/101‑5 (MQ=1)        ATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGC.GGGGgctcc                                                                                             <  1:3004295/101‑6 (MQ=1)        ATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGC.GGGGgctcc                                                                                             <  2:3724872/101‑6 (MQ=1)          CGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGC.GGGGggggccc                                                                                           >  1:265479/1‑94 (MQ=0)           GCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGCGGGGGCTCCGCC                                                                                           <  2:913407/101‑1 (MQ=1)           GCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGCGGGGGCTCCGCC                                                                                           <  2:2937174/101‑1 (MQ=1)            CAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGCGGGGGCTCCGCCC                                                                                          <  1:1688970/101‑1 (MQ=1)             AGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGCGGGGGCTCCGCCCC                                                                                         <  2:1053110/101‑1 (MQ=1)               CGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGCGGGGGCTCCGCCCCcg                                                                                       <  1:679077/101‑3 (MQ=1)                 CACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGCGGGGGCTCCGCCCCcgca                                                                                     <  2:4012485/101‑5 (MQ=31)                  ACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGCGGGGGCTCCGCCCCcgcac                                                                                    <  2:3871944/101‑6 (MQ=32)                                                                                                                                                                                                          CGGAGAAATCGCAGCGCACCGGGCTGCGGATCATCTCGAATTTCCTGAACTGGAAGCCGTGAGAGGATTTCGCCTCGGCTTTCGCCGAGGCGACCCGGC.G...................................................................................................  <  NC_014034/1253994‑1253895 ....................................................................................................GGGGCTCCGCCCCGGACCCCCGGGATATTTTGGGCAAGATAAAAGGGGCCCGGGGTCCTGAGGCCTTCGGTCCTGCCGGGGACGGCTTTGGCTTTTCCTG  <  NC_014034/2577295‑2577197 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG