New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1303934 =	78 (0.390)	45 (0.220)	15/190	21.6	0.32	intergenic (+121/+36)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
	?	NC_014034	2640144 =	114 (0.540)					intergenic (‑120/+156)	thrS/RCAP_rcc02462	threonyl‑tRNA synthetase/hypothetical protein
Rejected: Position hash score below cutoff.

CTCGGCGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGG.........................................  <  NC_014034/1304038‑1303934 ....................................................................................................GGGGGCGCTGCCCCCCTCTTGG.CTTCGGCCAATTCGCCCCCCGAG  >  NC_014034/2640144‑2640183                                                                                                                                                         CGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGC                                          <  1:3029792/101‑1 (MQ=1)        cgtTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGC                                        <  1:3800748/98‑1 (MQ=1)         GCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCT                                       <  1:3037535/101‑1 (MQ=1)          CTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG                                      >  2:2545846/1‑101 (MQ=1)           TTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGC                                     >  2:749433/1‑101 (MQ=1)           TTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGC                                     >  1:1466554/1‑101 (MQ=1)            TTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGgggcc                                    >  2:495037/1‑96 (MQ=1)            TTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCC                                    <  1:1381043/101‑1 (MQ=1)             TATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCC                                   >  2:2336286/1‑101 (MQ=1)              agGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCC                                  <  1:3211655/99‑1 (MQ=1)              ATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCC                                  >  1:552135/1‑101 (MQ=1)                  GTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTC                              <  1:169244/101‑1 (MQ=1)                  GTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTC                              <  1:1179547/101‑1 (MQ=1)                   TTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCT                             <  1:3506749/101‑1 (MQ=1)                    TCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT                            <  2:2333683/101‑1 (MQ=1)                      AAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGG                          >  2:2694938/1‑101 (MQ=1)                      AAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGG                          >  2:3837480/1‑101 (MQ=1)                      AAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGG                          <  1:3974830/101‑1 (MQ=1)                        GCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGG.Cc                       <  2:206591/101‑2 (MQ=1)                         CCGGTGCGCAAGGCCCTGATGCGGGCGGGCTTGGGGATGCGGTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGG.Cct                      <  1:2730796/101‑3 (MQ=0)                         CCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGG.Cct                      >  2:1689231/1‑99 (MQ=1)                          CGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGG.Cctt                     >  1:2517444/1‑98 (MQ=11)                           GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGG.Ccttc                    <  2:1631221/101‑5 (MQ=31)                           GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGG.Ccttc                    <  2:1181236/101‑5 (MQ=31)                            GTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGG.Ccttcg                   <  1:768462/101‑6 (MQ=32)                             TGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGG                   <  2:2330204/101‑1 (MQ=32)                               CGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCC                 <  2:3798482/101‑1 (MQ=32)                                ggAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCA                <  2:1452735/99‑1 (MQ=17)                                gatAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCA                <  2:3568170/98‑1 (MQ=17)                                GCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCA                <  1:1293546/101‑1 (MQ=32)                                GCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCA                <  2:2141158/101‑1 (MQ=32)                                 CAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAA               <  1:1707650/101‑1 (MQ=32)                                  AAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAAT              >  2:920928/1‑101 (MQ=14)                                  AAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAAT              >  1:3889132/1‑101 (MQ=14)                                  AAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAAT              <  2:1772094/101‑1 (MQ=14)                                   AGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATT             <  2:3677760/101‑1 (MQ=11)                                    GACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTC            >  2:86585/1‑101 (MQ=1)                                      CCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCac          <  1:859231/101‑3 (MQ=14)                                       CCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACC         >  1:3744536/1‑101 (MQ=17)                                       CCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACC         <  2:2108071/101‑1 (MQ=14)                                       CCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACC         >  2:1490184/1‑101 (MQ=17)                                         TGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCC       >  2:1805826/1‑101 (MQ=17)                                         TGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCC       <  1:1267025/101‑1 (MQ=14)                                             GCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGg   >  1:3236409/1‑100 (MQ=0)                                              CGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGgg  <  1:1811778/101‑3 (MQ=0)                                                                                                                                                    CTCGGCGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGG.........................................  <  NC_014034/1304038‑1303934 ....................................................................................................GGGGGCGCTGCCCCCCTCTTGG.CTTCGGCCAATTCGCCCCCCGAG  >  NC_014034/2640144‑2640183 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG