| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_014034 | = 1396198 | 126 (0.920) | 35 (0.250) | 3/130 | 24.7 | 0.36 | coding (80/1578 nt) | RCAP_rcc01307 | hypothetical protein |
| ? | NC_014034 | 1434680 = | NA (NA) | intergenic (‑459/‑499) | RCAP_rcc01334/RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator | |||||
| Rejected: Position hash score below cutoff. | |||||||||||
GCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.............................................................................. > NC_014034/1396157‑1396198
.............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGCCCGCGGCG > NC_014034/1434680‑1434722
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gccctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGG > 2:988126/10‑101 (MQ=0)
gccctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGG < 2:959109/92‑1 (MQ=0)
gccctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGG < 1:599133/92‑1 (MQ=0)
ccctcgccCGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGA < 1:3575894/93‑1 (MQ=0)
ccctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGA < 1:1796616/93‑1 (MQ=0)
ccctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGA < 2:212854/93‑1 (MQ=0)
cctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGAT < 2:404372/94‑1 (MQ=0)
ctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATC < 1:2900958/95‑1 (MQ=0)
tcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCG > 1:3733577/6‑101 (MQ=1)
cgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGA < 2:1713020/97‑1 (MQ=1)
cgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGA > 1:1951001/5‑101 (MQ=1)
gcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA > 1:1743777/4‑101 (MQ=1)
caCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA < 2:26960/99‑1 (MQ=1)
caCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA > 2:2396321/3‑101 (MQ=1)
aCGTCGCTCTCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC > 2:1220508/2‑101 (MQ=1)
aCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGCTCGAAAC > 2:721106/2‑101 (MQ=1)
CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt < 1:444287/101‑2 (MQ=1)
CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt < 2:499947/101‑2 (MQ=1)
CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt < 1:2647483/101‑2 (MQ=1)
CGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt < 1:1248864/101‑2 (MQ=1)
GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtg > 1:418309/1‑99 (MQ=1)
TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGAGCGTGGATCGAAACTGC > 2:3799775/1‑101 (MQ=1)
GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgt < 2:449355/101‑3 (MQ=11)
GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgg > 2:3956885/1‑99 (MQ=11)
ccCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtg < 1:1170059/99‑4 (MQ=11)
CTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtg > 2:1986429/1‑98 (MQ=11)
CTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtg > 2:1964467/1‑98 (MQ=11)
cCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgc < 2:4135168/100‑5 (MQ=11)
TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgggc > 1:812489/1‑97 (MQ=11)
TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACaccgcgg > 2:3193246/1‑94 (MQ=0)
CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgcg < 2:1795645/101‑6 (MQ=11)
CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGCgtgcg > 1:444584/1‑96 (MQ=1)
CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGAGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgcg < 1:3571313/101‑6 (MQ=2)
CCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgggcgcg > 2:4119558/1‑94 (MQ=2)
CCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgcgcgc > 1:434030/1‑93 (MQ=0)
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GCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.............................................................................. > NC_014034/1396157‑1396198
.............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGCCCGCGGCG > NC_014034/1434680‑1434722
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
|