New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1396198126 (0.920)35 (0.250) 3/130 24.7 0.36 coding (80/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1434680 = NA (NA)intergenic (‑459/‑499) RCAP_rcc01334/RCAP_rcc01335 hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

ACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGCCCGCGGCGTTTGACCTGGTCGCGG..GCAGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACG  >  NC_014034/1434580‑1434778
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cggcgcTGAAGGAGGGTGATCTCGCGGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAg                                                                                                      <  2:1937686/99‑1 (MQ=255)
acgCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAg                                                                                                      >  2:632683/1‑101 (MQ=255)
acgCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAg                                                                                                      >  2:1121896/1‑101 (MQ=255)
acgCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAg                                                                                                      <  1:2310575/101‑1 (MQ=255)
 cgcgCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGt                                                                                                     >  1:2524635/1‑101 (MQ=255)
 cgcgCTGAAGGAGGGTGATCTCGGTGGCGCCCTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGt                                                                                                     <  1:1869250/101‑1 (MQ=255)
  gcgcTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTc                                                                                                    <  2:2841550/101‑1 (MQ=255)
   cgcTGGAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg                                                                                                   <  2:2098604/101‑1 (MQ=255)
   cgcTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg                                                                                                   <  1:1141778/101‑1 (MQ=255)
   cgcTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg                                                                                                   <  1:4031/101‑1 (MQ=255)
    gcTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACCCGGATTGCATGGGGCCGAGGGACAGGCTTTCAAGTCGc                                                                                                  >  1:4034200/1‑101 (MQ=18)
     cTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCt                                                                                                 <  2:2435558/101‑1 (MQ=255)
     cTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCt                                                                                                 >  2:1082665/1‑101 (MQ=255)
     cTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCt                                                                                                 >  1:2467289/1‑101 (MQ=255)
     cTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATGGCATGGCGCCGAGGGACAGGCCTTGCAGTCGCt                                                                                                 >  1:3636270/1‑101 (MQ=255)
      tGAAGGAGGGTGATTTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTc                                                                                                >  1:2647464/1‑101 (MQ=255)
      tGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTc                                                                                                <  1:639530/101‑1 (MQ=255)
      tGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTc                                                                                                >  1:197745/1‑101 (MQ=255)
      tGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTc                                                                                                <  1:3545602/101‑1 (MQ=255)
       gAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcc                                                                                               <  1:1200143/101‑1 (MQ=255)
        aaGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccc                                                                                              >  2:2409317/1‑101 (MQ=255)
         aggaggGTGATCTCGGTGGCGCCTTGTCGGTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGGCAGGGTTTGCAATCGCTcccc                                                                                             >  2:3455710/1‑101 (MQ=17)
         aggaggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccc                                                                                             >  1:2011351/1‑101 (MQ=255)
         aggaggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccc                                                                                             <  1:118552/101‑1 (MQ=255)
          ggaggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccccc                                                                                            <  1:1489128/101‑1 (MQ=255)
          ggagcGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccccc                                                                                            <  1:627530/101‑1 (MQ=255)
           gaggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccccc                                                                                           <  2:2649729/101‑1 (MQ=255)
           gaggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccccc                                                                                           <  2:2019408/101‑1 (MQ=255)
           gaggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGAGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccccc                                                                                           <  1:1323742/101‑1 (MQ=255)
            aggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcg                                                                                          <  2:3535163/101‑1 (MQ=255)
            aggGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcg                                                                                          >  2:3968621/1‑101 (MQ=255)
            aggGTGATCTCGGGGGCGCCTTGTCTCTCCCCCCGCGGGGGCGTGGATCGAGACACGGATTGCGTGGCGGCGAGGGACAGGCGCTGCAATCGCTCCCCCcg                                                                                          >  2:2039394/1‑101 (MQ=14)
                tGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCggg                                                                                      >  1:3722340/1‑101 (MQ=255)
                 gATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCgggg                                                                                     <  1:3959962/101‑1 (MQ=255)
                 gATCTCGGTGGCGCCTTGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACCCGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCgggg                                                                                     <  1:1378924/101‑1 (MQ=255)
                 gATCTCGGTGGCGCCTTGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCgggg                                                                                     <  2:4033939/101‑1 (MQ=255)
                   tctcGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGc                                                                                   >  1:1706051/1‑101 (MQ=40)
                    ctcGGTGGCGCCTTTTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCg                                                                                  <  1:2042018/101‑1 (MQ=255)
                    ctcGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCg                                                                                  >  2:221552/1‑101 (MQ=40)
                    ctcGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCg                                                                                  >  1:2208736/1‑101 (MQ=40)
                      cGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTg                                                                                <  1:72553/101‑1 (MQ=38)
                       ggTGGCCCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTgg                                                                               <  1:1002520/101‑1 (MQ=18)
                        gTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGa                                                                              >  2:2050486/1‑101 (MQ=35)
                        gTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGa                                                                              <  2:2221273/101‑1 (MQ=35)
                        gTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGa                                                                              >  2:1300867/1‑101 (MQ=35)
                        gTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGa                                                                              <  1:1236869/101‑1 (MQ=35)
                        gTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGa                                                                              >  2:787057/1‑101 (MQ=35)
                          ggCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATc                                                                            >  2:1809871/1‑101 (MQ=33)
                          ggCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATc                                                                            >  1:4151170/1‑101 (MQ=33)
                          ggCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATc                                                                            <  1:1928691/101‑1 (MQ=33)
                           gcgcCTTGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                                           <  2:2340426/101‑1 (MQ=17)
                                                                                              tcgatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATc        <  2:1766922/95‑1 (MQ=2)
                                                                                              tcgatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATc        <  1:2672350/95‑1 (MQ=2)
                                                                                                   cgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAac   <  1:2016934/100‑1 (MQ=2)
                                                                                                    gTCACTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAaca  <  1:3797446/101‑2 (MQ=2)
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ACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGCCCGCGGCGTTTGACCTGGTCGCGG..GCAGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACG  >  NC_014034/1434580‑1434778

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG