New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396771 =	143 (1.010)	31 (0.220)	3/134	25.2	0.18	coding (653/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1434846	133 (0.630)					intergenic (‑625/‑333)	RCAP_rcc01334/RCAP_rcc01335	hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

CATCCACACGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC.............................................................................  <  NC_014034/1396812‑1396771 ...........................................................................ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAAGGCGCCAC  <  NC_014034/1434846‑1434803                                           |||||||||||||||||||||||||||||||||                                             gatctacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGG                    <  1:2367063/91‑1 (MQ=9) gatctacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGG                    <  2:1583913/91‑1 (MQ=9)  atctacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGG                   <  2:953493/92‑1 (MQ=9)  atctacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGG                   >  1:3683906/10‑101 (MQ=9)   tctacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGG                  <  1:2193943/93‑1 (MQ=9)   tctacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGG                  >  1:3804552/9‑101 (MQ=9)     tacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAG                <  2:4025181/95‑1 (MQ=14)     tacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAG                <  2:1805460/95‑1 (MQ=14)     tacgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGGCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGgg                >  1:3622218/7‑99 (MQ=9)      acgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  1:1424694/96‑1 (MQ=14)      acgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  2:554750/96‑1 (MQ=14)      acgccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGAGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGC               >  2:2527389/6‑101 (MQ=9)         ccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC            <  2:521881/99‑1 (MQ=31)          cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACc           >  1:1337728/2‑100 (MQ=11)          cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACc           <  2:2272359/100‑2 (MQ=11)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcg          >  2:1289406/1‑99 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcg          >  2:3104666/1‑99 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcg          >  1:1394292/1‑99 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGGGACcgg         >  1:457378/1‑98 (MQ=0)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcgg         >  2:1112195/1‑98 (MQ=1)             TTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggc        <  2:900211/101‑5 (MQ=1)              TCGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggcg       >  1:1280086/1‑96 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTGGATCCACGCCCCCGCGGGGGGAGCGACcggcgg      >  1:4208987/1‑95 (MQ=0)               CGATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggcgg      <  1:2921276/101‑7 (MQ=0)                GATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggcggg     >  1:448258/1‑94 (MQ=0)                GATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggcggg     <  1:247355/101‑8 (MQ=0)                GATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggcggg     >  1:2422780/1‑94 (MQ=0)                 ATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggcggga    >  2:3518092/1‑93 (MQ=0)                 ATCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggcacgc    <  2:1424000/101‑9 (MQ=0)                  TCCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggcgggat   >  1:2586171/1‑92 (MQ=0)                   CCACGCCCCCGCGGGGGGAGCGACGGCGATGTGACCAGCTTCGATGCGGTCAAGCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcggcgggatc  >  2:2729424/1‑91 (MQ=0)                                           |||||||||||||||||||||||||||||||||                                             CATCCACACGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC.............................................................................  <  NC_014034/1396812‑1396771 ...........................................................................ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAAGGCGCCAC  <  NC_014034/1434846‑1434803 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG