| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_014034 | = 1398002 | 140 (1.020) | 37 (0.270) | 2/130 | 25.9 | 0.23 | intergenic (+306/+1592) | RCAP_rcc01307/RCAP_rcc01309 | hypothetical protein/IS66 family transposase |
| ? | NC_014034 | 1434813 = | 107 (0.510) | intergenic (‑592/‑366) | RCAP_rcc01334/RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator | |||||
| Rejected: Position hash score below cutoff. | |||||||||||
ACCTTCAAAAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC................................................................................ > NC_014034/1397961‑1398002
.............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGCG > NC_014034/1434813‑1434857
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gtgccgctgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGG > 1:1804649/11‑101 (MQ=1)
gccgctgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT < 2:2750288/93‑1 (MQ=1)
gccgctgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT > 2:1021792/9‑101 (MQ=1)
gccgctgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT < 1:3901565/93‑1 (MQ=1)
ccgctgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC < 2:3387133/94‑1 (MQ=1)
cgctgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCG < 2:2039215/95‑1 (MQ=1)
gctgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA < 1:3872994/96‑1 (MQ=1)
ctgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA > 2:1804106/5‑101 (MQ=1)
ctgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA < 1:4104645/97‑1 (MQ=1)
tgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA > 1:2362919/4‑101 (MQ=1)
tgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA < 1:3477866/98‑1 (MQ=1)
cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAaa > 2:3298710/2‑99 (MQ=1)
GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT < 1:3674910/101‑1 (MQ=1)
GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT > 1:101328/1‑101 (MQ=1)
GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT > 1:1932008/1‑101 (MQ=1)
GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGCGGCGTGGATCGACACAc > 2:3610652/1‑100 (MQ=0)
TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc < 1:3421885/101‑2 (MQ=1)
TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc < 1:595657/101‑2 (MQ=1)
TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACAGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc > 1:1500181/1‑100 (MQ=1)
ngccnCCCCCGCGGGGGCGTGGATCGAAACTCCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATcg < 1:3196898/96‑3 (MQ=0)
CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGAGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAccg > 2:53898/1‑98 (MQ=1)
CTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAt > 2:606040/1‑100 (MQ=1)
CTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAt < 2:1734567/101‑2 (MQ=1)
cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtg < 2:543381/100‑3 (MQ=1)
cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtg < 2:1123935/100‑3 (MQ=1)
cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtg < 2:1819103/100‑3 (MQ=1)
cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtg < 2:2424900/100‑3 (MQ=1)
TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtg > 1:4018302/1‑99 (MQ=1)
CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtga > 2:4146519/1‑98 (MQ=1)
CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtga > 1:3048408/1‑98 (MQ=1)
CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtga > 1:2880808/1‑98 (MQ=1)
CCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtgat < 1:1085694/101‑5 (MQ=1)
CCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtgat < 2:3743034/101‑5 (MQ=1)
CCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtgatca < 1:3298951/101‑7 (MQ=0)
CCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtgatca < 1:2699718/101‑7 (MQ=0)
CCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtgatcaa > 2:2891494/1‑94 (MQ=0)
CGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGAtgatcaaa < 1:1495540/101‑9 (MQ=0)
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ACCTTCAAAAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC................................................................................ > NC_014034/1397961‑1398002
.............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGGAAAACCGCG > NC_014034/1434813‑1434857
Base quality scores:
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
|