New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1699965 =	30 (0.170)	21 (0.120)	10/168	22.8	0.26	intergenic (+38/+5)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
	?	NC_014034	= 2590221	90 (0.420)					intergenic (‑120/‑136)	glnE/RCAP_rcc02415	glutamate‑ammonia‑ligase adenylyltransferase/hypothetical protein
Rejected: Position hash score below cutoff.

TCCGCAATATTGCGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GG............................................  <  NC_014034/1700057‑1699965 ................................................................................................................CGCCGAGGCGACCCGGCGGGGGCGCTG  <  NC_014034/2590221‑2590195                                                                                                 ||||||||||||||||                            TCCGCAATATTGCGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.AG.ATcggaag                                     >  2:2255665/1‑95 (MQ=0)            GCGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGAGGGG.GG.ATTTCGCCTCGGCTGACG                           >  2:4229939/1‑101 (MQ=0)             CGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGGTGT.ATTTCGCCTCGGCTGACGC                          <  1:3909811/101‑1 (MQ=0)              GACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GTTATTTCGCCTCGGCTGACGCC                         <  1:2406995/101‑1 (MQ=0)              GACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCC                         <  1:582912/101‑1 (MQ=0)               ACGCCTGGTTCTCGGGCGATTATCCGGTGANGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCG                        <  1:1697574/101‑1 (MQ=0)                CGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGA                       <  2:1695697/101‑1 (MQ=0)                 GCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAG                      >  1:2283838/1‑101 (MQ=0)                 GCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAG                      >  2:15004/1‑101 (MQ=0)                   CTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAGGC                    <  1:1280011/101‑1 (MQ=0)                   CTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAGGC                    <  2:2283670/101‑1 (MQ=0)                     GTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGACCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAGGCGA                  >  2:56039/1‑101 (MQ=0)                        TCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAGGCGACCC               <  2:2406030/101‑1 (MQ=0)                        TCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAGGCGACCC               <  2:3164969/101‑1 (MQ=0)                            GGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCG           <  2:2800946/101‑1 (MQ=12)                               CGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGG        <  2:3043121/101‑1 (MQ=255)                                  TTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgc     <  1:383392/101‑3 (MQ=255)                                  TTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgc     <  1:3082159/101‑3 (MQ=255)                                   TATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgct    <  2:21457/101‑4 (MQ=255)                                   TATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgct    <  2:1835992/101‑4 (MQ=255)                                    ATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgctc   <  2:3082117/101‑5 (MQ=255)                                     TCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GGTATTTCGCCTCGGCTGACGCCGAGGCGACCCGGCGGGGGgctcc  <  1:204605/101‑6 (MQ=255)                                                                                                 ||||||||||||||||                            TCCGCAATATTGCGACGCCTGTTTCTCGGGCGATTATCCGGTGAAGCCCTCCGATCAGATCGGCAAGGGCTTCAAGATGAAGGGCTGA.GGG.GG............................................  <  NC_014034/1700057‑1699965 ................................................................................................................CGCCGAGGCGACCCGGCGGGGGCGCTG  <  NC_014034/2590221‑2590195 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG