New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1699965 =	30 (0.170)	21 (0.120)	10/168	22.8	0.26	intergenic (+38/+5)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
	?	NC_014034	= 2590221	90 (0.420)					intergenic (‑120/‑136)	glnE/RCAP_rcc02415	glutamate‑ammonia‑ligase adenylyltransferase/hypothetical protein
Rejected: Position hash score below cutoff.

GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTT  >  NC_014034/1699866‑1700065                                                                                                      |                                                                                                     ggagggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTAGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATAcc                                                                                                     >  2:1102100/1‑101 (MQ=255)   agggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAAGAcacc                                                                                                   >  1:4171026/1‑101 (MQ=255)     ggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCt                                                                                                 <  2:3230491/101‑1 (MQ=255)      gagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTc                                                                                                <  1:1576207/101‑1 (MQ=255)      gagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTc                                                                                                <  2:2194860/101‑1 (MQ=255)         ccgccgATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGc                                                                                             <  2:1440701/101‑1 (MQ=255)                                        gCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATc                                                              <  2:4170764/101‑1 (MQ=255)                                                               ccccgccgggtCGCCTCGGC.GTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCg                                        >  2:3043121/11‑101 (MQ=25)                                                                  cgccgggtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGccc                                     >  2:2800946/8‑101 (MQ=37)                                                                         tcgtgtgggC.TGC.GCCGAGTGTAAATGCCCCCTCAGCCGTTCATCTTGACGCCCTGGCCGATGTGATCGGAGGTCTTCACCGGATAATCGCCCGAGAAACa                             <  1:1507165/94‑1 (MQ=255)                                                                         tCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGGTCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAAc                              <  2:56039/101‑1 (MQ=38)                                                                              ctcggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGc                          <  2:15004/91‑1 (MQ=255)                                                                              ctcggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGc                          <  1:2283838/91‑1 (MQ=255)                                                                               tcggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCg                         >  2:1695697/10‑101 (MQ=255)                                                                                cggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCNTCACCGGATAATCGCCCGAGAACCAGGCGt                        >  1:1697574/9‑101 (MQ=255)                                                                                 ggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTc                       >  1:582912/8‑101 (MQ=255)                                                                                 ggcgtcagcCGAGGCGAAATAACCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTc                       >  1:2406995/8‑101 (MQ=255)                                                                                  gcgtcagcCGAGGCGAAATACACCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCg                      >  1:3909811/7‑101 (MQ=255)                                                                                   cgtcagcCGAGGCGAAATCCCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGc                     <  2:4229939/96‑1 (MQ=255)                                                                                    gtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCa                    >  2:2355603/5‑101 (MQ=255)                                                                                    gtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCa                    >  2:2532474/5‑101 (MQ=255)                                                                                     tcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCaa                   >  1:307762/4‑101 (MQ=255)                                                                                      cagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAat                  >  2:132512/3‑101 (MQ=255)                                                                                      cagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAat                  >  1:3035313/3‑101 (MQ=255)                                                                                        gcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAatat                >  2:2657110/1‑101 (MQ=255)                                                                                        gcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAatat                >  2:849994/1‑101 (MQ=255)                                                                                        gcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCACTTGCCGATCTGATCGGAGGGATTCACCGGATAATAGCCCGAGAAACAGGCGTCGCAatat                >  2:1907400/1‑101 (MQ=255)                                                                                         ccGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATAtt               >  1:89252/1‑101 (MQ=255)                                                                                         ccGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATAtt               >  1:3592610/1‑101 (MQ=255)                                                                                         ccGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATAtt               >  1:218289/1‑101 (MQ=255)                                                                                          cGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTg              <  2:1281045/101‑1 (MQ=255)                                                                                          cGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTg              <  1:1234641/101‑1 (MQ=255)                                                                                            aGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCg            >  1:2898819/1‑101 (MQ=255)                                                                                             ggCGAAATACCCCGCCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTGACCGGATAAGCGCCCGAGAAAGAGGCGTCGCAAGATTggcg           >  2:4217425/1‑98 (MQ=255)                                                                                              gCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGa          <  2:2911840/101‑1 (MQ=255)                                                                                               cGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGAc         <  2:2031949/101‑1 (MQ=255)                                                                                               cGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATAGCCCGAGAAACAGGCGTCGCAATATTACGGAc         >  2:2599244/1‑101 (MQ=255)                                                                                                gAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACa        >  2:906090/1‑101 (MQ=255)                                                                                                gAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACa        >  1:3849869/1‑101 (MQ=255)                                                                                                 aaaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAg       <  2:3352092/101‑1 (MQ=255)                                                                                                 aaaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAg       >  2:3941422/1‑101 (MQ=255)                                                                                                 aaaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAg       >  1:4095947/1‑101 (MQ=255)                                                                                                  aaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAgg      <  2:3081929/101‑1 (MQ=255)                                                                                                  aaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAgg      >  2:864458/1‑101 (MQ=255)                                                                                                   aTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGc     >  1:1148214/1‑101 (MQ=255)                                                                                                    tACCCCCTCAGCCCTTCATCTTGAAGCCCTCGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCg    >  2:2138061/1‑101 (MQ=255)                                                                                                     aCCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGt   >  1:3335842/1‑101 (MQ=255)                                                                                                      cccccTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGtt  <  1:2661107/101‑1 (MQ=255)                                                                                                      |                                                                                                     GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTT  >  NC_014034/1699866‑1700065 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG