New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1732710 =	40 (0.200)	23 (0.110)	16/190	21.1	0.17	intergenic (‑134/‑269)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
	?	NC_014034	2555844 =	191 (0.900)					intergenic (‑707/+39)	mraZ/RCAP_rcc02384	protein MraZ/Mrp/NBP35 family protein
Rejected: Position hash score below cutoff.

AGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGC....................................................................................................  <  NC_014034/1732814‑1732710 ....................................................................................................GGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCAGGCGCGGCGAAATCAGGCCACGCCGCGCCCGATCAGCTCTGCCGCGATCGCCGCATAGGCCCCGGCCGCGGCG  >  NC_014034/2555844‑2555943                                                                                                                                                                                                                    AAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCG                                                                                                     >  1:616342/1‑101 (MQ=1)       AGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGG                                                                                                    >  2:3201783/1‑101 (MQ=1)        GCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGA                                                                                                   <  1:1699217/101‑1 (MQ=1)        GCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGA                                                                                                   <  1:660794/101‑1 (MQ=1)         CGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAG                                                                                                  >  1:3585227/1‑101 (MQ=1)          GGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGC                                                                                                 >  2:524084/1‑101 (MQ=1)          GGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGC                                                                                                 <  1:2155091/101‑1 (MQ=1)          GGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGC                                                                                                 <  2:3066972/101‑1 (MQ=1)           GGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCC                                                                                                <  1:382794/101‑1 (MQ=1)             GCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCC                                                                                              <  1:3122338/101‑1 (MQ=1)                 TTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGGGCGGGGGCGGAGCCCCCGCC                                                                                          >  1:781005/1‑101 (MQ=14)                  TGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCC                                                                                         <  2:3905086/101‑1 (MQ=32)                  TGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCC                                                                                         >  1:3342615/1‑101 (MQ=32)                  TGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCC                                                                                         >  1:461669/1‑101 (MQ=32)                     CTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGG                                                                                      >  1:1372133/1‑101 (MQ=35)                     CTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGG                                                                                      >  1:1166127/1‑101 (MQ=35)                      TGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGc                                                                                     >  2:980894/1‑100 (MQ=25)                      TGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGT                                                                                     >  1:3078020/1‑101 (MQ=37)                         TGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTAGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGGCGC                                                                                  >  1:2306225/1‑101 (MQ=255)                           ACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCG                                                                                >  1:2351195/1‑101 (MQ=39)                            CGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGC                                                                               >  2:220130/1‑101 (MQ=39)                                     CATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGgccccgcc                                                                      >  1:2528192/1‑93 (MQ=255)                                      ATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGgccccgccg                                                                     >  2:2857051/1‑92 (MQ=255)                                                                                                                                                                                                               AGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAGGGGGGCCTGGTCCCGCTTGTTTCTTCTTGGCGCAAATACGCCGGGGGTGCGGGGGC....................................................................................................  <  NC_014034/1732814‑1732710 ....................................................................................................GGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCAGGCGCGGCGAAATCAGGCCACGCCGCGCCCGATCAGCTCTGCCGCGATCGCCGCATAGGCCCCGGCCGCGGCG  >  NC_014034/2555844‑2555943 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG