New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1732710 =40 (0.200)23 (0.110) 16/190 21.1 0.17 intergenic (‑134/‑269) RCAP_rcc01601/tgt FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
?NC_014034 2555844 = 191 (0.900)intergenic (‑707/+39) mraZ/RCAP_rcc02384 protein MraZ/Mrp/NBP35 family protein
Rejected: Position hash score below cutoff.

GGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.A.CC..GGGC..GGGCGG..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTT  >  NC_014034/1732610‑1732809
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gggTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.A.CC..CGGG..GGGGgg..g..g                                                                                                     >  2:2690075/1‑101 (MQ=255)
    aTCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..CGGC..GGGGgg..g..gggg                                                                                                  >  1:2256525/1‑98 (MQ=255)
     tCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.A.CCCGGGGC..GGGGgg..g..ggcg                                                                                                  >  2:1792202/1‑98 (MQ=255)
        gggggAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGGCGCGGCC.A.CC..CGGG..GGGGgg..g..ggggggccc                                                                                             >  1:2766531/1‑93 (MQ=255)
         ggggAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGGCGCGGCG.A.CC..CGGG..GGGGGG..G..Tccccccccc                                                                                            >  1:4151882/1‑97 (MQ=255)
            gagaGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.A.CC..CCGG..GGGGGG..G..GGCCCCCCCcccc                                                                                         >  1:970843/1‑101 (MQ=255)
               agGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCAcccc                                                                                         <  2:4151620/101‑1 (MQ=25)
                ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCAccccc                                                                                        <  2:3159941/101‑1 (MQ=25)
                ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCAccccc                                                                                        <  1:3287269/101‑1 (MQ=25)
                ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCAccccc                                                                                        <  2:1678316/101‑1 (MQ=25)
                ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCAccccc                                                                                        <  2:1609783/101‑1 (MQ=25)
                  tAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCgg                                                                                      <  2:2756478/101‑1 (MQ=25)
                  tAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCgg                                                                                      <  1:3278563/101‑1 (MQ=25)
                  tAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGC..GGGGGG..G..CCGCCCCCCccccccccc                                                                                    >  1:414817/1‑97 (MQ=255)
                   aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGC..GGGGGG..G..GCGCCCCCCcccccccccg                                                                                   >  2:2528008/1‑96 (MQ=255)
                         cGTCGGTGCGGGGCGGACGGCCGGGTGCCAAGCAGGGTTTCGCCGCGGGGGGGCCGCGGCGCC.CC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTAttt                                                                               <  2:1530854/101‑1 (MQ=16)
                          gTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTg                                                                              <  1:1894797/101‑1 (MQ=21)
                           tCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTgc                                                                             <  1:1054370/101‑1 (MQ=21)
                           tCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGC..GGGGGG..GCCGCCCCCGCCCCCCCCGCggcctttg                                                                             >  2:1030967/1‑94 (MQ=255)
                               tGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCa                                                                         <  2:3485951/101‑1 (MQ=21)
                                  ggggCGGAAAGCCGCGTGCCAGGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGTGCCaaga                                                                      <  2:1265441/101‑1 (MQ=18)
                                  ggggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTCTTTGCGCCaaga                                                                      <  1:2298605/101‑1 (MQ=21)
                                  ggggCAGAAGGCCGCGTGCCCAGAATGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGT..GGGGTGTCC..GCCCCCCCACCTCCGGCTTATTTGCGTCaaga                                                                      <  2:1080930/101‑1 (MQ=255)
                                   gggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaa                                                                     <  2:941662/101‑1 (MQ=21)
                                    gcgagAAAGCCGCGTGCCAGGCGGGGGTGCGCGGCGGGGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaag                                                                    <  2:1469560/97‑1 (MQ=9)
                                      cGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAgaagaa                                                                  <  1:3872664/101‑1 (MQ=18)
                                       ggAGAGCCGCGTGCCAAGCGGGGTTTCGCCGGGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGaaa                                                                 <  1:2921000/101‑1 (MQ=17)
                                       ggAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGaaa                                                                 <  2:759145/101‑1 (MQ=18)
                                       ggAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGaaa                                                                 <  2:3776171/101‑1 (MQ=18)
                                        gAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAAc                                                                <  2:163316/101‑1 (MQ=18)
                                        gAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAAc                                                                <  1:2126933/101‑1 (MQ=18)
                                             ccGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCg                                                           <  2:1785524/101‑1 (MQ=18)
                                                cgTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGa                                                        <  2:3437024/101‑1 (MQ=18)
                                                 gTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAc                                                       <  2:2892352/101‑1 (MQ=18)
                                                  tGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAcc                                                      <  1:1954841/101‑1 (MQ=18)
                                                    ccAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAg                                                    <  1:2690281/101‑1 (MQ=18)
                                                     cAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAgg                                                   <  2:2133135/101‑1 (MQ=18)
                                                      aaGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGc                                                  <  2:2256366/101‑1 (MQ=18)
                                                       aGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGcc                                                 <  1:3210292/101‑1 (MQ=18)
                                                           gggTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCTGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGcccccc                                             <  2:3061714/101‑1 (MQ=18)
                                                             gTTTCGCCGCGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTg                                           <  1:3254114/101‑1 (MQ=18)
                                                                 cgccgcGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGc                                       <  2:2680733/101‑1 (MQ=18)
                                                                   ccgcGGCGGGGCCGCGGCGTG.CC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCg                                     <  1:2523589/101‑1 (MQ=21)
                                                                   ccgcGGCGGGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCg                                     <  1:428965/101‑1 (MQ=18)
                                                                      cggcggGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCAt                                  <  2:2857051/101‑1 (MQ=18)
                                                                       ggcggGGCCGCGGCG.ACCC..GGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATg                                 <  1:2528192/101‑1 (MQ=18)
                                                                                                      ggggctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGc         >  1:3122338/9‑101 (MQ=255)
                                                                                                        ggctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGccc       >  1:382794/7‑101 (MQ=255)
                                                                                                         gctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGcccc      >  1:2155091/6‑101 (MQ=255)
                                                                                                         gctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGcccc      >  2:3066972/6‑101 (MQ=255)
                                                                                                         gctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGcccc      <  2:524084/96‑1 (MQ=255)
                                                                                                          ctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCg     <  1:3585227/97‑1 (MQ=255)
                                                                                                           tccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGc    >  1:660794/4‑101 (MQ=255)
                                                                                                           tccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGc    >  1:1699217/4‑101 (MQ=255)
                                                                                                            ccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCt   <  2:3201783/99‑1 (MQ=255)
                                                                                                             cgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCtt  <  1:616342/100‑1 (MQ=255)
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GGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.A.CC..GGGC..GGGCGG..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTT  >  NC_014034/1732610‑1732809

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG