New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221968 =614 (3.220)54 (0.280) 26/180 15.4 0.09 coding (689/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222083 466 (2.200)coding (574/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

ATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA..............................................................................................................  <  NC_014034/222067‑221968
..............................................................................................................CCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACC  <  NC_014034/222083‑221984
                                                                                                    ||||||||||                                                                                                    
ATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAT                                                                                                               >  1:1852577/1‑101 (MQ=0)
 TCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC                                                                                                              <  2:1441578/101‑1 (MQ=0)
 TCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC                                                                                                              >  2:3853742/1‑101 (MQ=0)
  CCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                                                                             >  1:554969/1‑101 (MQ=0)
  CCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                                                                             <  1:2623650/101‑1 (MQ=0)
   CTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                                                                                                            <  2:2203993/101‑1 (MQ=0)
    TACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA                                                                                                           >  2:458580/1‑101 (MQ=0)
        GACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAGGGATCCGACGGA                                                                                                       >  2:1776942/1‑101 (MQ=0)
         ACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCCCGGATCCGACCGATCCCACGGATCCGACggcc                                                                                                      >  2:2277375/1‑97 (MQ=0)
          CCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATC                                                                                                     >  1:1397923/1‑101 (MQ=0)
           CCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                                                                                                    <  2:3540326/101‑1 (MQ=0)
            CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc                                                                                                   <  1:281940/101‑2 (MQ=1)
            CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc                                                                                                   <  1:2452113/101‑2 (MQ=11)
            CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc                                                                                                   <  2:991756/101‑2 (MQ=11)
             GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGACCCCACGGATCCGACCGACCCcc                                                                                                  >  1:2209968/1‑99 (MQ=0)
                                                                   cccgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCA                                            <  1:3010524/97‑1 (MQ=0)
                                                                   cacgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCA                                            >  1:3321531/5‑101 (MQ=2)
                                                                   cacgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCA                                            >  1:2450362/5‑101 (MQ=2)
                                                                    acgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCAC                                           <  2:3867369/98‑1 (MQ=0)
                                                                    aatGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCcc                                           >  2:2470955/4‑99 (MQ=0)
                                                                     cgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACG                                          <  1:2171812/99‑1 (MQ=0)
                                                                      gGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACGGATCCCACGG                                         >  2:3486168/2‑101 (MQ=0)
                                                                       GATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGA                                        >  2:55833/1‑101 (MQ=0)
                                                                       GATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGA                                        <  1:950765/101‑1 (MQ=0)
                                                                       GATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGA                                        >  2:2775555/1‑101 (MQ=0)
                                                                         TCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGAtc                                      <  1:1209236/101‑3 (MQ=0)
                                                                          ccgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCC                                     <  2:3334779/98‑1 (MQ=0)
                                                                          ccgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCC                                     <  1:1136406/98‑1 (MQ=0)
                                                                           cgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCG                                    <  2:171835/99‑1 (MQ=0)
                                                                           cgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCG                                    <  2:2140190/99‑1 (MQ=0)
                                                                            gACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGA                                   >  1:2758331/2‑101 (MQ=0)
                                                                             ACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGAC                                  <  1:3073678/101‑1 (MQ=0)
                                                                               GGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGGCCG                                >  1:559045/1‑101 (MQ=2)
                                                                               GGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCG                                >  1:290911/1‑101 (MQ=9)
                                                                                 gCCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGAT                              <  2:2314216/100‑1 (MQ=12)
                                                                                 cCCCAACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGAT                              <  2:2928477/100‑1 (MQ=255)
                                                                                 ACCCGACCGACCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGAT                              <  1:791631/101‑1 (MQ=255)
                                                                                   CCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCC                            >  1:2204152/1‑101 (MQ=12)
                                                                                   CCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCC                            <  1:3484173/101‑1 (MQ=12)
                                                                                   CCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCC                            >  2:2962493/1‑101 (MQ=12)
                                                                                    CGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCC                           >  2:123405/1‑101 (MQ=12)
                                                                                    CGACCGATCCCACGGATCCGACCGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCC                           <  2:902029/101‑1 (MQ=0)
                                                                                      ACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                         <  1:3793247/101‑1 (MQ=9)
                                                                                      ACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                         <  1:1482764/101‑1 (MQ=9)
                                                                                       CCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG                        <  2:1168435/101‑1 (MQ=9)
                                                                                        CGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATACCACGGATCCGACCGATCCCACGG                       <  1:2357555/101‑1 (MQ=255)
                                                                                         GATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGc                      >  1:1564583/1‑100 (MQ=12)
                                                                                         GATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                      >  2:3939650/1‑101 (MQ=12)
                                                                                         GATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                      >  1:625359/1‑101 (MQ=12)
                                                                                         GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                      <  1:4023445/101‑1 (MQ=12)
                                                                                          ATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAc                     >  2:3491287/1‑100 (MQ=12)
                                                                                          ATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAc                     >  1:3048018/1‑100 (MQ=12)
                                                                                          ATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAT                     >  1:1038594/1‑101 (MQ=12)
                                                                                           TCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC                    <  2:2758112/101‑1 (MQ=12)
                                                                                             CCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCCCGGATCCGACCGATCCCACGGATCCG                  >  1:1334465/1‑101 (MQ=255)
                                                                                             CCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                  <  1:1314036/101‑1 (MQ=12)
                                                                                             CCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                  >  1:2385522/1‑101 (MQ=12)
                                                                                             CCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                  >  2:2512121/1‑101 (MQ=12)
                                                                                             CCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                  <  1:3141831/101‑1 (MQ=12)
                                                                                               ACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                <  1:3832867/101‑1 (MQ=12)
                                                                                                  GATCCGACCGATCAGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGA             >  2:395231/1‑101 (MQ=255)
                                                                                                   acCCGCCCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAT            <  2:358009/99‑1 (MQ=9)
                                                                                                   ATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGGCCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAT            <  1:116435/101‑1 (MQ=9)
                                                                                                   ATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAT            >  1:2476616/1‑101 (MQ=9)
                                                                                                     CCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC          <  1:55848/101‑1 (MQ=0)
                                                                                                     CCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC          <  2:661234/101‑1 (MQ=0)
                                                                                                      CGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC         <  2:2149682/101‑1 (MQ=0)
                                                                                                      CGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC         >  1:4227553/1‑101 (MQ=0)
                                                                                                      CGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC         <  2:2528234/101‑1 (MQ=0)
                                                                                                       GACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA        <  1:1054679/101‑1 (MQ=0)
                                                                                                       GACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA        >  2:577397/1‑101 (MQ=0)
                                                                                                       GACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA        <  2:1957752/101‑1 (MQ=0)
                                                                                                         CCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCGTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG      >  2:2156508/1‑101 (MQ=0)
                                                                                                           GATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA    >  2:2053777/1‑101 (MQ=0)
                                                                                                           GATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA    >  2:1434519/1‑101 (MQ=0)
                                                                                                           GATCCGCCGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA    <  2:1546673/101‑1 (MQ=0)
                                                                                                            ATCCGACGGCCCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAt   <  1:141785/101‑2 (MQ=0)
                                                                                                            ATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAt   >  2:2224466/1‑100 (MQ=0)
                                                                                                            ATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAg   >  2:195614/1‑100 (MQ=0)
                                                                                                             TCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAtc  <  2:1551810/101‑3 (MQ=0)
                                                                                                    ||||||||||                                                                                                    
ATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA..............................................................................................................  <  NC_014034/222067‑221968
..............................................................................................................CCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACC  <  NC_014034/222083‑221984

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG