New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	221974 =	731 (3.710)	11 (0.060)	11/186	23.8	0.02	coding (683/2748 nt)	RCAP_rcc00185	hypothetical protein
	?	NC_014034	= 222101	377 (1.780)					coding (556/2748 nt)	RCAP_rcc00185	hypothetical protein
Rejected: Position hash score below cutoff.

CCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCC...........................................................................................................  <  NC_014034/222065‑221974 ...................................................................................................CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATC  <  NC_014034/222101‑222002                                                                                             |||||||                                                                                                     ccccCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCC                                                                                                    <  1:808528/97‑1 (MQ=0)    ACGGCCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGAC                                                                                                 <  1:577457/101‑1 (MQ=0)       GACCCGACCGCTCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                                                                                              <  2:2053664/101‑1 (MQ=0)       GACCCGACCGATCCCACGGACCCGACCGATCCCACGGGCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGA                                                                                              <  2:499792/101‑1 (MQ=0)       GACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGCCGGACCCGACCGA                                                                                              >  2:1140043/1‑101 (MQ=0)                   CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                                                  <  1:771987/101‑1 (MQ=12)                   CCCACGGACCCGACCGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                                                  <  2:1707676/101‑1 (MQ=12)                    CCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGGACCCG                                                                                 >  1:2918082/1‑101 (MQ=9)                       CGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACCGACCCGACc                                                                              >  1:1021694/1‑100 (MQ=9)                        GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGACCCCACGGACCCGACcg                                                                             >  1:2988222/1‑99 (MQ=9)                           cCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACC                                                                          <  1:2578970/100‑1 (MQ=12)                                                                CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                                     <  1:497808/101‑1 (MQ=0)                                                                CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                                     <  2:1213833/101‑1 (MQ=2)                                                                 CGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCG                                    >  2:1209142/1‑101 (MQ=0)                                                                  GACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGA                                   >  1:2446438/1‑101 (MQ=0)                                                                    CCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACC                                 >  1:3021309/1‑101 (MQ=9)                                                                    CCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACC                                 >  2:2896757/1‑101 (MQ=9)                                                                    CCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACC                                 >  1:877495/1‑101 (MQ=2)                                                                    CCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACC                                 <  2:1679120/101‑1 (MQ=0)                                                                      GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGA                               >  2:849399/1‑101 (MQ=255)                                                                      GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGA                               >  1:1441680/1‑101 (MQ=255)                                                                      GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGA                               >  1:171873/1‑101 (MQ=255)                                                                       ATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGAT                              >  1:1957878/1‑101 (MQ=255)                                                                          CCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCg                           >  1:2643110/1‑100 (MQ=255)                                                                           CACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCga                          >  1:2075321/1‑99 (MQ=255)                                                                                            ccACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCC         <  2:3278672/99‑1 (MQ=0)                                                                                              cCGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC       <  2:3320351/100‑1 (MQ=0)                                                                                              ACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC       >  2:4043929/1‑101 (MQ=0)                                                                                                GGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGG     <  1:154222/101‑1 (MQ=0)                                                                                                   CCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAcc  <  2:1532101/101‑3 (MQ=0)                                                                                             |||||||                                                                                                     CCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCC...........................................................................................................  <  NC_014034/222065‑221974 ...................................................................................................CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATC  <  NC_014034/222101‑222002 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG