New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	221977 =	695 (5.470)	18 (0.140)	9/120	18.0	0.04	coding (680/2748 nt)	RCAP_rcc00185	hypothetical protein
	?	NC_014034	= 222089	157 (0.740)					coding (568/2748 nt)	RCAP_rcc00185	hypothetical protein
Rejected: Position hash score below cutoff.

ACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA....................................................................................................................................  <  NC_014034/222076‑221977 ............................................................................................................................................ACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC  <  NC_014034/222089‑221998                                                                                                     ||||||||||||||||||||||||||||||||||||||||                                                                                             ACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCCCGGACCCGACCGAC                                                                                                                                     >  1:1221668/1‑101 (MQ=0)                  GACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAGGGATCCGACGGA                                                                                                                    >  2:1776942/1‑101 (MQ=0)                   ACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCCCGGATCCGACCGATCCCACGGATCCGACGGcc                                                                                                                   >  2:2277375/1‑99 (MQ=0)                     CCGACCGATCCCACGGATCCGTCCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC                                                                                                                 <  1:2992/101‑1 (MQ=0)                      CGACCGATCCCACGGATCCGACCGATNNNANGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc                                                                                                                <  1:2271895/101‑2 (MQ=2)                      CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc                                                                                                                <  2:991756/101‑2 (MQ=11)                      CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc                                                                                                                <  1:281940/101‑2 (MQ=1)                      CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc                                                                                                                <  1:2452113/101‑2 (MQ=11)                       GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCca                                                                                                               <  2:2415949/101‑3 (MQ=14)                       GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGACCCCACGGATCCGACCGACCCcc                                                                                                               >  1:2209968/1‑99 (MQ=0)                        ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                                                                              <  1:3003182/101‑1 (MQ=17)                         CCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACg                                                                                                             <  2:3759518/101‑2 (MQ=14)                         CCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACg                                                                                                             <  1:853893/101‑2 (MQ=17)                          CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACgg                                                                                                            >  2:3743156/1‑99 (MQ=17)                          CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACgg                                                                                                            >  1:4071415/1‑99 (MQ=17)                                       CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                                                                                               <  2:1213833/101‑1 (MQ=2)                                       CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                                                                                               <  1:497808/101‑1 (MQ=0)                                        CGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCG                                                                                              <  2:3128197/101‑1 (MQ=255)                                        CGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCG                                                                                              >  2:1209142/1‑101 (MQ=0)                                         GACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGA                                                                                             >  1:2446438/1‑101 (MQ=0)                                           CCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACc                                                                                           >  2:2896757/1‑100 (MQ=9)                                           CCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACc                                                                                           <  2:1679120/101‑2 (MQ=0)                                           CCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACc                                                                                           >  1:3021309/1‑100 (MQ=9)                                           CCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACc                                                                                           >  1:877495/1‑100 (MQ=2)                                                                              cCCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGAC                                                        <  2:1177642/100‑1 (MQ=255)                                                                              ACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGAC                                                        <  1:1091673/101‑1 (MQ=255)                                                                               CCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACC                                                       <  1:3306811/101‑1 (MQ=255)                                                                                CGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCG                                                      >  1:1767034/1‑101 (MQ=255)                                                                                CGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCG                                                      >  2:204522/1‑101 (MQ=255)                                                                                 GATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGA                                                     >  1:1095634/1‑101 (MQ=255)                                                                                 GATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGA                                                     >  2:3073448/1‑101 (MQ=255)                                                                                 GATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGA                                                     >  2:2939927/1‑101 (MQ=255)                                                                                    CCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCC                                                  >  2:141761/1‑101 (MQ=255)                                                                                      CACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCtc                                                >  1:2910306/1‑99 (MQ=255)                                                                                                 cgGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACC                                     <  1:2772391/99‑1 (MQ=255)                                                                                                  gGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCG                                    >  1:4067249/2‑101 (MQ=255)                                                                                                    gCCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGAT                                  <  2:3976285/100‑1 (MQ=255)                                                                                                    ACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGAT                                  >  2:3575009/1‑101 (MQ=255)                                                                                                     CCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATC                                 <  1:3063623/101‑1 (MQ=255)                                                                                                     CCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATC                                 <  1:1219421/101‑1 (MQ=255)                                                                                                     CCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATC                                 >  2:2413629/1‑101 (MQ=255)                                                                                                        CACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCA                              >  1:2450362/1‑101 (MQ=2)                                                                                                        CACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCA                              >  1:3321531/1‑101 (MQ=2)                                                                                                         ACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCAC                             <  2:3867369/101‑1 (MQ=0)                                                                                                          CGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACG                            <  1:2171812/101‑1 (MQ=0)                                                                                                            GATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGA                          >  2:2775555/1‑101 (MQ=0)                                                                                                            GATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGA                          >  2:55833/1‑101 (MQ=0)                                                                                                            GATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGA                          <  1:950765/101‑1 (MQ=0)                                                                                                                         CGACCGATCCCACGGATCCGACCGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCC             <  2:902029/101‑1 (MQ=0)                                                                                                                             CGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGa         >  2:1031411/1‑100 (MQ=2)                                                                                                                              GATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGc        >  1:341609/1‑100 (MQ=2)                                                                                                                               ATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGGTCCCACGGAc       >  2:739681/1‑100 (MQ=0)                                                                                                                                TCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC      >  1:1920778/1‑101 (MQ=0)                                                                                                                                 CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC     >  1:3880842/1‑101 (MQ=2)                                                                                                                                 CCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC     <  1:2428650/101‑1 (MQ=0)                                                                                                                                  CCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG    >  2:1236556/1‑101 (MQ=2)                                                                                                                                    cCGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC  <  2:1064092/100‑1 (MQ=0)                                                                                                                                    ACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC  <  1:1564461/101‑1 (MQ=0)                                                                                                                                    ACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC  >  1:2081187/1‑101 (MQ=0)                                                                                                     ||||||||||||||||||||||||||||||||||||||||                                                                                             ACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGA....................................................................................................................................  <  NC_014034/222076‑221977 ............................................................................................................................................ACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGAC  <  NC_014034/222089‑221998 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG